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- PDB-8xf3: Crystal structure of the reassembled C-phycocyanin octamer from T... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8xf3 | |||||||||
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Title | Crystal structure of the reassembled C-phycocyanin octamer from Thermoleptolyngbya sp. O-77 | |||||||||
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Function / homology | ![]() ![]() ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Nguyen, H.K. / Teramoto, T. / Kakuta, Y. / Yoon, K.S. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin. Authors: Nguyen, H.K. / Minato, T. / Teramoto, T. / Ogo, S. / Kakuta, Y. / Yoon, K.S. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 141.4 KB | Display | ![]() |
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PDB format | ![]() | 113.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 8xf0C ![]() 8xf1C ![]() 8xf2C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17560.531 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() #2: Protein | Mass: 18097.465 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() #3: Chemical | ChemComp-CYC / ![]() #4: Chemical | ChemComp-PO4 / | ![]() #5: Water | ChemComp-HOH / | ![]() Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.59 Å3/Da / Density % sol: 65.75 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 1.6M sodium chloride, 8% polyethylene glycol 6000, 20% glycerol |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jun 4, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.5→50 Å / Num. obs: 36274 / % possible obs: 100 % / Redundancy: 63 % / CC1/2: 0.998 / Net I/σ(I): 14.3 |
Reflection shell | Resolution: 2.5→2.64 Å / Num. unique obs: 5721 / CC1/2: 0.554 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.5→47.11 Å
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Refine LS restraints |
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LS refinement shell |
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