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- PDB-8x3h: Crystal structure of iron-bound recombinant ovotransferrin N-lobe... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8x3h | ||||||
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Title | Crystal structure of iron-bound recombinant ovotransferrin N-lobe at 0.93 angstrom resolution | ||||||
![]() | Ovotransferrin | ||||||
![]() | METAL TRANSPORT / transferrin / atomic resolution | ||||||
Function / homology | ![]() iron ion transmembrane transport / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Toyoda, M. / Mikami, B. / Mizutani, K. | ||||||
Funding support | 1items
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![]() | ![]() Title: Crystal structure of iron-bound ovotransferrin N-lobe at atomic resolution Authors: Toyoda, M. / Tanabe, A. / Mikami, B. / Hirose, M. / Mizutani, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 209.9 KB | Display | ![]() |
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PDB format | ![]() | 166.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 20.5 KB | Display | |
Data in CIF | ![]() | 33.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 36528.309 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-FE / |
#3: Chemical | ChemComp-CO3 / |
#4: Chemical | ChemComp-GOL / |
#5: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.03 Å3/Da / Density % sol: 39.31 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion / pH: 7.5 Details: 100mM HEPES-Na buffer, 21% PEG 3350, 200mM Sodium acetate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RIGAKU RAXIS V / Detector: IMAGE PLATE / Date: Dec 10, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.7 Å / Relative weight: 1 |
Reflection | Resolution: 0.93→50 Å / Num. obs: 190261 / % possible obs: 95.4 % / Redundancy: 7.8 % / CC1/2: 0.997 / Rpim(I) all: 0.015 / Rrim(I) all: 0.045 / Net I/σ(I): 62.5 |
Reflection shell | Resolution: 0.93→0.95 Å / Redundancy: 6.3 % / Mean I/σ(I) obs: 5.2 / Num. unique obs: 7502 / CC1/2: 0.865 / Rpim(I) all: 0.188 / Rrim(I) all: 0.491 / % possible all: 76.1 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 0.93→10 Å
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