- PDB-8wv1: Ambient Temperature Structure of 50S Ribosomal Subunit from Therm... -
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Basic information
Entry
Database: PDB / ID: 8wv1
Title
Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
Components
(50S ribosomal protein ...) x 23
(Large ribosomal subunit protein ...) x 6
23S rRNA
5S rRNA
Keywords
RIBOSOME / Large ribosomal subunit / bacteria
Function / homology
Function and homology information
large ribosomal subunit / transferase activity / 5S rRNA binding / ribosomal large subunit assembly / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding ...large ribosomal subunit / transferase activity / 5S rRNA binding / ribosomal large subunit assembly / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / ribosome / structural constituent of ribosome / translation / ribonucleoprotein complex / mRNA binding / metal ion binding / cytoplasm Similarity search - Function
Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / : / Ribosomal protein L31 type A / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 ...Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / : / Ribosomal protein L31 type A / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / : / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L36 signature. / Ribosomal protein L32p, bacterial type / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L28 / Ribosomal protein L35, non-mitochondrial / : / Ribosomal protein L5, bacterial-type / Ribosomal protein L18, bacterial-type / : / Ribosomal protein L6, bacterial-type / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein L20 signature. / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L35 / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal L28 family / Ribosomal protein L33 superfamily / Ribosomal protein L16 / Ribosomal protein L28/L24 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein L30, bacterial-type / : / L28p-like / Ribosomal protein L27 / Ribosomal L27 protein / Ribosomal protein L20 / Ribosomal L32p protein family / Ribosomal protein L19 / Ribosomal protein L19 / Ribosomal protein L20 / Ribosomal protein L20, C-terminal / Ribosomal protein L19 superfamily / Ribosomal protein L21 / Ribosomal protein L32p / Ribosomal protein L17 / Ribosomal protein L17 superfamily / Ribosomal protein L17 / Ribosomal proteins 50S L24/mitochondrial 39S L24 / Ribosomal protein L21-like / L21-like superfamily / Ribosomal prokaryotic L21 protein / Ribosomal protein L34 / Ribosomal protein L34 / Ribosomal protein L24 / Ribosomal protein L13, bacterial-type / Ribosomal protein L3, bacterial/organelle-type / Ribosomal protein L15, bacterial-type / 50S ribosomal protein uL4 / Ribosomal protein L30, conserved site / Ribosomal protein L30 signature. / Ribosomal protein L5, conserved site / Ribosomal protein L5 signature. / Ribosomal protein L2 signature. / Ribosomal protein L29, conserved site / Ribosomal protein L29 signature. / Ribosomal protein L2, conserved site / : / Ribosomal protein L5, N-terminal Similarity search - Domain/homology
RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL33 ...RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL33 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein uL24 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL23 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein bL36 / Large ribosomal subunit protein bL25 / Large ribosomal subunit protein bL31 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL17 Similarity search - Component
Biological species
Thermus thermophilus HB8 (bacteria)
Method
X-RAY DIFFRACTION / FREE ELECTRON LASER / MOLECULAR REPLACEMENT / Resolution: 3.99 Å
A: 23S rRNA B: 5S rRNA C: 50S ribosomal protein L2 D: 50S ribosomal protein L3 E: 50S ribosomal protein L4 F: 50S ribosomal protein L5 G: 50S ribosomal protein L6 H: Large ribosomal subunit protein bL9 I: 50S ribosomal protein L13 J: Large ribosomal subunit protein uL14 K: 50S ribosomal protein L15 L: 50S ribosomal protein L16 M: 50S ribosomal protein L17 N: 50S ribosomal protein L18 O: 50S ribosomal protein L19 P: 50S ribosomal protein L20 Q: 50S ribosomal protein L21 R: 50S ribosomal protein L22 S: 50S ribosomal protein L23 T: Large ribosomal subunit protein uL24 U: 50S ribosomal protein L25 V: Large ribosomal subunit protein bL27 W: Large ribosomal subunit protein bL28 X: Large ribosomal subunit protein uL29 Y: 50S ribosomal protein L30 Z: 50S ribosomal protein L31 0: 50S ribosomal protein L32 13: 50S ribosomal protein L33 2: 50S ribosomal protein L34 3: 50S ribosomal protein L35 4: 50S ribosomal protein L36 a: 23S rRNA b: 5S rRNA c: 50S ribosomal protein L2 d: 50S ribosomal protein L3 e: 50S ribosomal protein L4 f: 50S ribosomal protein L5 g: 50S ribosomal protein L6 h: Large ribosomal subunit protein bL9 i: 50S ribosomal protein L13 j: Large ribosomal subunit protein uL14 k: 50S ribosomal protein L15 l: 50S ribosomal protein L16 m: 50S ribosomal protein L17 n: 50S ribosomal protein L18 o: 50S ribosomal protein L19 p: 50S ribosomal protein L20 q: 50S ribosomal protein L21 r: 50S ribosomal protein L22 s: 50S ribosomal protein L23 t: Large ribosomal subunit protein uL24 u: 50S ribosomal protein L25 v: Large ribosomal subunit protein bL27 w: Large ribosomal subunit protein bL28 x: Large ribosomal subunit protein uL29 y: 50S ribosomal protein L30 z: 50S ribosomal protein L31 5: 50S ribosomal protein L32 6: 50S ribosomal protein L33 7: 50S ribosomal protein L34 8: 50S ribosomal protein L35 9: 50S ribosomal protein L36 hetero molecules