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Open data
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Basic information
Entry | Database: PDB / ID: 8vw7 | ||||||
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Title | UIC-11-BPE-AgNO3 silver binding with UIC-11-BPE | ||||||
![]() | UIC-11-BPE-AgNO3 | ||||||
![]() | DE NOVO PROTEIN / synthetic construct | ||||||
Function / homology | SILVER ION / NITRATE ION![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ganatra, P. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons. Authors: Ganatra, P. / Wang, D.F. / Ganatra, V. / Dang, V.T. / Nguyen, A.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 29.7 KB | Display | ![]() |
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PDB format | ![]() | 20.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.8 KB | Display | ![]() |
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Full document | ![]() | 436.7 KB | Display | |
Data in XML | ![]() | 3.4 KB | Display | |
Data in CIF | ![]() | 3.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8vogC ![]() 8vp7C ![]() 8vpcC ![]() 8vpdC ![]() 8vpeC ![]() 8vpjC ![]() 8vpsC ![]() 8vptC ![]() 8vpxC ![]() 8vpyC ![]() 8vpzC ![]() 8vq0C ![]() 8vsfC ![]() 8vt8C ![]() 8vw8C ![]() 8vxsC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 1530.772 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.26 Å3/Da / Density % sol: 62.26 % |
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Crystal grow | Temperature: 298 K / Method: slow cooling / Details: Acetonitrile, water |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Mar 11, 2023 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.6199 Å / Relative weight: 1 |
Reflection | Resolution: 1.3→17.31 Å / Num. obs: 6790 / % possible obs: 91.14 % / Redundancy: 2.6 % / Biso Wilson estimate: 17.78 Å2 / CC1/2: 0.998 / Net I/σ(I): 11.98 |
Reflection shell | Resolution: 1.3→1.347 Å / Num. unique obs: 619 / CC1/2: 0.792 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 30.3 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.3→17.31 Å
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Refine LS restraints |
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LS refinement shell |
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