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Open data
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Basic information
Entry | Database: PDB / ID: 8vpy | ||||||
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Title | UIC-16-MER extension of UIC-1 | ||||||
![]() | UIC-16-MER | ||||||
![]() | DE NOVO PROTEIN / synthetic construct | ||||||
Function / homology | METHANOL![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ganatra, P. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons. Authors: Ganatra, P. / Wang, D.F. / Ganatra, V. / Dang, V.T. / Nguyen, A.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 65.7 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.3 KB | Display | ![]() |
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Full document | ![]() | 436.4 KB | Display | |
Data in XML | ![]() | 4.7 KB | Display | |
Data in CIF | ![]() | 5.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8vogC ![]() 8vp7C ![]() 8vpcC ![]() 8vpdC ![]() 8vpeC ![]() 8vpjC ![]() 8vpsC ![]() 8vptC ![]() 8vpxC ![]() 8vpzC ![]() 8vq0C ![]() 8vsfC ![]() 8vt8C ![]() 8vw7C ![]() 8vw8C ![]() 8vxsC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 1969.336 Da / Num. of mol.: 4 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-MOH / #3: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 50.57 % |
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Crystal grow | Temperature: 298 K / Method: slow cooling / Details: methanol and water |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Nov 17, 2023 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.729317 Å / Relative weight: 1 |
Reflection | Resolution: 1.21→21.01 Å / Num. obs: 16793 / % possible obs: 96.31 % / Redundancy: 3.5 % / Biso Wilson estimate: 11.75 Å2 / CC1/2: 0.996 / Net I/σ(I): 5.63 |
Reflection shell | Resolution: 1.21→1.253 Å / Num. unique obs: 1682 / CC1/2: 0.474 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18.61 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.21→21.01 Å
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Refine LS restraints |
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LS refinement shell |
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