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- PDB-8vos: Escherichia coli transcription-translation loosely coupled comple... -

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基本情報

登録情報
データベース: PDB / ID: 8vos
タイトルEscherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
要素
  • (30S ribosomal protein ...) x 3
  • (50S ribosomal protein ...) x 17
  • (DNA-directed RNA polymerase subunit ...) x 4
  • (Large ribosomal subunit protein ...) x 14
  • (Small ribosomal subunit protein ...) x 18
  • (Transcription termination/antitermination protein ...) x 2
  • 16S rRNA
  • 23S rRNA
  • 5S rRNA
  • E-site and P-site tRNA (fMet)
  • NT DNA
  • Ribosomal protein L21
  • T DNA
  • mRNA with 60 nt long spacer
キーワードTRANSCRIPTION / translation / coupling / NusG / NusA / ops / TTC
機能・相同性
機能・相同性情報


RNA polymerase complex / negative regulation of cytoplasmic translational initiation / transcription elongation-coupled chromatin remodeling / submerged biofilm formation / stringent response / cellular response to cell envelope stress / regulation of DNA-templated transcription initiation / bacterial-type flagellum assembly / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex ...RNA polymerase complex / negative regulation of cytoplasmic translational initiation / transcription elongation-coupled chromatin remodeling / submerged biofilm formation / stringent response / cellular response to cell envelope stress / regulation of DNA-templated transcription initiation / bacterial-type flagellum assembly / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex / misfolded RNA binding / Group I intron splicing / RNA folding / bacterial-type flagellum-dependent cell motility / transcriptional attenuation / endoribonuclease inhibitor activity / nitrate assimilation / RNA-binding transcription regulator activity / translational termination / negative regulation of cytoplasmic translation / DnaA-L2 complex / translation repressor activity / negative regulation of translational initiation / negative regulation of DNA-templated DNA replication initiation / mRNA regulatory element binding translation repressor activity / assembly of large subunit precursor of preribosome / positive regulation of RNA splicing / ribosome assembly / transcription elongation factor complex / regulation of DNA-templated transcription elongation / cytosolic ribosome assembly / : / : / : / : / transcription antitermination / : / : / translational initiation / cell motility / DNA-templated transcription initiation / DNA-templated transcription termination / response to radiation / maintenance of translational fidelity / mRNA 5'-UTR binding / ribonucleoside binding / DNA-directed RNA polymerase / large ribosomal subunit / transferase activity / ribosome binding / response to heat / ribosomal small subunit biogenesis / ribosomal small subunit assembly / small ribosomal subunit / small ribosomal subunit rRNA binding / 5S rRNA binding / ribosomal large subunit assembly / protein-containing complex assembly / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / intracellular iron ion homeostasis / cytoplasmic translation / tRNA binding / protein dimerization activity / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / DNA-binding transcription factor activity / ribonucleoprotein complex / response to antibiotic / nucleotide binding / negative regulation of DNA-templated transcription / mRNA binding / magnesium ion binding / DNA binding / RNA binding / zinc ion binding / membrane / cytosol / cytoplasm
類似検索 - 分子機能
: / Transcription termination factor NusA, C-terminal duplication / Transcription termination factor NusA / Transcription factor NusA, N-terminal / KH domain, NusA-like / NusA, N-terminal domain superfamily / NusA N-terminal domain / NusA-like KH domain / Transcription termination/antitermination protein NusA, bacterial / Ribosomal protein S1 ...: / Transcription termination factor NusA, C-terminal duplication / Transcription termination factor NusA / Transcription factor NusA, N-terminal / KH domain, NusA-like / NusA, N-terminal domain superfamily / NusA N-terminal domain / NusA-like KH domain / Transcription termination/antitermination protein NusA, bacterial / Ribosomal protein S1 / : / Ribosomal protein S1-like / Transcription antitermination protein, NusG / Transcription antitermination protein, NusG, bacteria, conserved site / Transcription termination factor nusG signature. / Ribosomal protein L7/L12, oligomerisation / Ribosomal protein L7/L12, oligomerisation domain superfamily / Ribosomal protein L7/L12 dimerisation domain / Ribosomal protein L7/L12 / Ribosomal protein L7/L12, C-terminal / Ribosomal protein L7/L12 C-terminal domain / NusG-like / Transcription termination factor nusG / Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like / NusG, N-terminal / In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. / DNA repair Rad51/transcription factor NusA, alpha-helical / Type-1 KH domain profile. / NusG, N-terminal domain superfamily / Helix-hairpin-helix domain / Ribosomal protein L10, eubacterial, conserved site / Ribosomal protein L10 signature. / Ribosomal protein L10 / : / S1 domain profile. / DNA-directed RNA polymerase, omega subunit / DNA-directed RNA polymerase, subunit beta-prime, bacterial type / DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily / DNA-directed RNA polymerase, beta subunit, external 1 domain / RNA polymerase beta subunit external 1 domain / RNA polymerase, alpha subunit, C-terminal / Bacterial RNA polymerase, alpha chain C terminal domain / DNA-directed RNA polymerase, alpha subunit / DNA-directed RNA polymerase beta subunit, bacterial-type / Ribosomal protein S21, conserved site / Ribosomal protein S21 signature. / Ribosomal protein L11, bacterial-type / Ribosomal protein L25, short-form / Ribosomal protein S14, bacterial/plastid / Ribosomal protein S1-like RNA-binding domain / S1 RNA binding domain / Ribosomal protein L31 type A / Ribosomal protein S21 superfamily / : / S1 domain / Ribosomal protein S21 / Ribosomal protein S16, conserved site / Ribosomal protein S16 signature. / Ribosomal protein L31 signature. / Ribosomal protein S21 / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L11, conserved site / Ribosomal protein L11 signature. / Ribosomal protein L10-like domain superfamily / Ribosomal protein L10P / Ribosomal protein L10 / Ribosomal protein L16 signature 1. / Ribosomal protein L21, conserved site / Ribosomal protein L21 signature. / Ribosomal protein L16 signature 2. / Ribosomal protein L16, conserved site / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / : / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L11, N-terminal / Ribosomal protein L11, N-terminal domain / Ribosomal protein L11/L12 / Ribosomal protein L11, C-terminal / Ribosomal protein L11, C-terminal domain superfamily / Ribosomal protein L11/L12, N-terminal domain superfamily / Ribosomal protein L11/L12 / Ribosomal protein L11, RNA binding domain / Ribosomal protein L17 signature. / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L36 signature. / Ribosomal protein L32p, bacterial type / Ribosomal protein L28/L24 superfamily / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal
類似検索 - ドメイン・相同性
: / : / : / : / DNA / DNA (> 10) / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) ...: / : / : / : / DNA / DNA (> 10) / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / Small ribosomal subunit protein bS18 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein bS21 / Large ribosomal subunit protein bL28 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein bL20 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS3 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein bL12 / Large ribosomal subunit protein bL33 / Small ribosomal subunit protein uS10 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL29 / Small ribosomal subunit protein uS17 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein uS8 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein uS9 / Large ribosomal subunit protein bL21 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL32 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein bS20 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS7 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL10 / Large ribosomal subunit protein uL11 / Large ribosomal subunit protein bL19 / Large ribosomal subunit protein bL27 / Large ribosomal subunit protein bL31 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL9 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS5 / DNA-directed RNA polymerase subunit alpha / DNA-directed RNA polymerase subunit omega / DNA-directed RNA polymerase subunit beta' / DNA-directed RNA polymerase subunit beta / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL16 / Transcription termination/antitermination protein NusA / Transcription termination/antitermination protein NusG / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL6 / Small ribosomal subunit protein bS1 / Large ribosomal subunit protein uL18 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein uL4 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein bL25
類似検索 - 構成要素
生物種Escherichia coli (大腸菌)
synthetic construct (人工物)
手法電子顕微鏡法 / 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 4.6 Å
データ登録者Molodtsov, V. / Wang, C. / Ebright, R.H.
資金援助 米国, 1件
組織認可番号国
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) 米国
引用ジャーナル: To Be Published
タイトル: Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
著者: Molodtsov, V. / Wang, C. / Ebright, R.H.
履歴
登録2024年1月15日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02025年7月23日Provider: repository / タイプ: Initial release
改定 1.02025年7月23日Data content type: EM metadata / Data content type: EM metadata / Provider: repository / タイプ: Initial release
改定 1.02025年7月23日Data content type: Half map / Part number: 1 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年7月23日Data content type: Half map / Part number: 2 / Data content type: Half map / Provider: repository / タイプ: Initial release
改定 1.02025年7月23日Data content type: Image / Data content type: Image / Provider: repository / タイプ: Initial release
改定 1.02025年7月23日Data content type: Primary map / Data content type: Primary map / Provider: repository / タイプ: Initial release

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
0: Ribosomal protein L21
1: 50S ribosomal protein L22
2: 50S ribosomal protein L23
3: 50S ribosomal protein L24
4: Large ribosomal subunit protein bL25
5: NT DNA
6: T DNA
7: mRNA with 60 nt long spacer
9: 50S ribosomal protein L10
A: E-site and P-site tRNA (fMet)
AA: DNA-directed RNA polymerase subunit beta
AB: Transcription termination/antitermination protein NusG
AC: DNA-directed RNA polymerase subunit alpha
AD: DNA-directed RNA polymerase subunit alpha
AE: DNA-directed RNA polymerase subunit beta'
AF: DNA-directed RNA polymerase subunit omega
AG: Transcription termination/antitermination protein NusA
B: E-site and P-site tRNA (fMet)
C: Small ribosomal subunit protein bS18
D: 16S rRNA
E: Small ribosomal subunit protein bS20
F: Small ribosomal subunit protein bS21
G: 30S ribosomal protein S2
H: Small ribosomal subunit protein bS1
I: Small ribosomal subunit protein uS3
J: Small ribosomal subunit protein uS4
K: Small ribosomal subunit protein uS5
L: Small ribosomal subunit protein bS6
M: Small ribosomal subunit protein uS7
N: Small ribosomal subunit protein uS8
O: Small ribosomal subunit protein uS9
P: Small ribosomal subunit protein uS10
Q: 30S ribosomal protein S11
R: 30S ribosomal protein S12
S: Small ribosomal subunit protein uS14
T: Small ribosomal subunit protein uS15
U: Small ribosomal subunit protein bS16
V: Small ribosomal subunit protein uS17
W: Small ribosomal subunit protein uS19
X: Small ribosomal subunit protein uS13
Y: 50S ribosomal protein L11
Z: Large ribosomal subunit protein bL12
a: 23S rRNA
b: Large ribosomal subunit protein bL27
c: 50S ribosomal protein L28
d: 5S rRNA
e: Large ribosomal subunit protein uL29
f: 50S ribosomal protein L30
g: 50S ribosomal protein L31
h: 50S ribosomal protein L2
i: 50S ribosomal protein L32
j: 50S ribosomal protein L3
k: 50S ribosomal protein L33
l: Large ribosomal subunit protein uL4
m: 50S ribosomal protein L34
n: Large ribosomal subunit protein uL5
o: 50S ribosomal protein L35
p: Large ribosomal subunit protein uL6
q: 50S ribosomal protein L36
r: Large ribosomal subunit protein bL9
s: Large ribosomal subunit protein uL13
t: Large ribosomal subunit protein uL14
u: Large ribosomal subunit protein uL15
v: 50S ribosomal protein L16
w: Large ribosomal subunit protein bL17
x: Large ribosomal subunit protein uL18
y: Large ribosomal subunit protein bL19
z: 50S ribosomal protein L20
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)2,806,38871
ポリマ－2,806,23368
非ポリマー1553
水00
1


  • 登録構造と同一
  • 登録者が定義した集合体
  • 根拠: 電子顕微鏡法, not applicable
タイプ名称対称操作数
identity operation1_5551

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要素

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タンパク質 , 1種, 1分子 0

#1: タンパク質 Ribosomal protein L21


分子量: 11586.374 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SSG2

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50S ribosomal protein ... , 17種, 17分子 1239Ycfghijkmoqvz

#2: タンパク質 50S ribosomal protein L22 / Large ribosomal subunit protein uL22


分子量: 12253.359 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplV, eryB, b3315, JW3277 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P61175
#3: タンパク質 50S ribosomal protein L23


分子量: 11222.160 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rplW, rplW_1, A5U30_004552, A8502_004023, A9X72_02185, ACN81_25520, ACU57_20960, AM464_09220, AW118_24900, AWP47_12645, B6R15_004069, B6R31_004968, BANRA_04328, BCB93_004293, BER14_25190, ...遺伝子: rplW, rplW_1, A5U30_004552, A8502_004023, A9X72_02185, ACN81_25520, ACU57_20960, AM464_09220, AW118_24900, AWP47_12645, B6R15_004069, B6R31_004968, BANRA_04328, BCB93_004293, BER14_25190, BF481_004930, BG944_001133, BGM66_003593, BJI68_08675, BJJ90_02125, BK292_20505, BK383_24645, BKL28_004543, BTB68_004356, BTQ06_10690, BvCmsKKP061_03030, BvCmsSIP010_02685, BXT93_05475, C0P57_002668, C1Q91_004904, C2121_004162, C2M16_25405, C2R31_004633, C3F40_19720, C9E67_02725, C9Z68_22635, CA593_09650, CF22_004849, CG692_20185, CG704_20870, CG831_003649, CIG67_10675, CQ986_004881, CR538_02420, CR539_21900, CR628_001366, CTR35_003630, CV83915_02780, CY655_21320, D1912_09370, D3C88_31150, D3G36_23050, D4M65_20655, D4N09_20255, D9D43_22550, D9E49_05240, D9J61_16735, DD762_23630, DIV22_15175, DNQ45_03840, DNX30_25395, DQ87_004776, DS732_24345, DTL43_20915, DU321_12085, E4K51_21575, E5H86_24440, E6D34_21675, EAI46_07560, EC95NR1_02709, ECs4183, EEP55_004492, EIA08_24040, EIZ93_12385, EN85_004349, EPS76_07130, EPS97_20010, EWK56_25080, ExPECSC038_03640, F7F11_22640, F7N46_23925, F9407_19210, F9413_21150, F9461_25570, F9B07_24600, FEJ01_22430, FIJ20_21110, FJQ40_18390, FKO60_25720, FOI11_019175, FOI11_04005, FPI65_20390, FPS11_25345, FTV92_20630, FV293_22380, FVB16_04955, FWK02_12650, FZN31_02550, FZU14_21905, G3V95_19930, G3W53_21040, G4A38_21595, G4A47_20865, G5603_24670, G8C01_22470, G9448_16990, GAI89_24745, GAJ12_24635, GGB84_004451, GJ11_21470, GKF66_21630, GNW61_16715, GOP25_22790, GP711_23390, GP954_00860, GP965_04380, GP975_01270, GP979_01920, GQA06_03865, GQM04_10650, GQM13_25285, GQM21_11315, GQN34_23350, GQW07_21465, GRO95_20730, GRW05_09145, GRW24_04670, GRW56_00380, GRW57_03455, GTP92_23110, GUC01_21265, H0O72_19500, HCQ42_003932, HEP30_018720, HEP34_004754, HHH44_004519, HI055_004156, HIE29_005203, HJQ60_004995, HLX92_09990, HLZ50_22095, HMV95_19690, HV109_02105, HV146_21755, HV209_14630, HVW04_17450, HVW43_18585, HVY77_02090, HVZ29_19180, HX086_19490, HX136_02110, I0E88_004501, I6H00_20840, I6H02_12075, IFB95_004822, IUC12_004844, J0541_004413, J5U05_004071, JNP96_25390, KV259_004342, KV317_004314, KV371_004328, KV406_004321, KV449_004356, KV455_004319, KV463_004341, KV469_004334, KV499_004405, KV500_004292, NCTC10082_02823, NCTC10089_00486, NCTC10090_03511, NCTC10418_00674, NCTC10429_01077, NCTC10764_03847, NCTC10767_01500, NCTC10865_00642, NCTC10974_00533, NCTC11112_01052, NCTC11124_04730, NCTC11126_02754, NCTC11181_02722, NCTC11341_01905, NCTC12950_00463, NCTC13148_03456, NCTC4450_02459, NCTC7927_00535, NCTC7928_02533, NCTC8009_01493, NCTC8179_05925, NCTC8333_00473, NCTC8500_00318, NCTC8621_00492, NCTC8622_00522, NCTC8959_03277, NCTC8960_03054, NCTC8985_04965, NCTC9001_04236, NCTC9044_01376, NCTC9045_00549, NCTC9073_00398, NCTC9075_00708, NCTC9081_00901, NCTC9117_00740, NCTC9702_00521, NCTC9706_02721, NCTC9962_06781, NEP60_26375, O5851_12245, RG28_21695, SAMEA3752557_01968, TUM18780_04200
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQV2
#4: タンパク質 50S ribosomal protein L24


分子量: 11339.250 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rplX, A8502_004032, A9X72_02230, ACN81_25475, ACU57_21005, AM464_09175, AW118_24855, AWP47_12690, B6R15_004078, B6R31_004977, BANRA_04319, BCB93_004284, BER14_25145, BF481_004939, BG944_ ...遺伝子: rplX, A8502_004032, A9X72_02230, ACN81_25475, ACU57_21005, AM464_09175, AW118_24855, AWP47_12690, B6R15_004078, B6R31_004977, BANRA_04319, BCB93_004284, BER14_25145, BF481_004939, BG944_001124, BGM66_003602, BJI68_08720, BJJ90_02170, BK292_20460, BK383_24690, BKL28_004552, BTB68_004365, BTQ06_10645, BvCmsKKP061_03021, BvCmsSIP010_02676, BXT93_05520, C0P57_002659, C1Q91_004913, C2121_004171, C2M16_25450, C2R31_004624, C3F40_19765, C9E67_02770, C9Z68_22590, CA593_09695, CF22_004858, CG704_20915, CG831_003640, CIG67_10720, CQ986_004890, CR538_02465, CR539_21855, CR628_001357, CTR35_003621, CV83915_02789, CY655_21275, D4M65_20610, D9D43_22595, DD762_23585, DIV22_15220, DNQ45_03795, DNX30_25440, DQ87_004785, DS732_24300, DTL43_20960, DU321_12040, E4K51_21530, E5H86_24485, E6D34_21720, EAI46_07515, EC95NR1_02700, ECs4174, EEP55_004501, EIA08_23995, EIZ93_12430, EN85_004358, EPS97_20055, ExPECSC038_03649, F7F11_22685, F7N46_23970, F9407_19255, F9413_21195, F9461_25615, F9B07_24645, FEJ01_22475, FIJ20_21155, FJQ40_18345, FKO60_25675, FOI11_019220, FOI11_03960, FPS11_25390, FTV92_20675, FTV93_20860, FV293_22425, FVB16_04910, FWK02_06310, FZN31_02595, FZU14_21860, G3V95_19885, G4A38_21550, G4A47_20820, G5603_24625, G8C01_22515, G9448_17035, GAI89_24790, GAJ12_24680, GJ11_21425, GKF66_21585, GNW61_16670, GOP25_22745, GP954_00905, GP965_04335, GP975_01225, GP979_01965, GQA06_03910, GQM04_10605, GQM13_25240, GQM21_11270, GQW07_21510, GRO95_20775, GRW05_09100, GRW24_04715, GRW56_00335, GRW57_03500, GTP92_23155, GUC01_21220, H0O72_19455, HCQ42_003941, HEP30_018675, HEP34_004763, HHH44_004528, HI055_004147, HJQ60_005004, HLX92_10035, HLZ50_22140, HMV95_19645, HV109_02150, HV146_21710, HV209_14675, HVW04_17495, HVW43_18630, HVY77_02135, HVZ29_19135, HX086_19445, HX136_02155, I0E88_004510, I6H00_20885, I6H02_12030, IUC12_004853, J0541_004404, J5U05_004080, JNP96_25345, KV259_004351, KV317_004323, KV371_004337, KV406_004330, KV449_004365, KV455_004328, KV463_004350, KV469_004343, KV499_004414, KV500_004301, NCTC10082_02832, NCTC10418_00684, NCTC10764_03856, NCTC10865_00652, NCTC10974_00542, NCTC11124_04721, NCTC11181_02731, NCTC11341_01896, NCTC12950_00472, NCTC7922_04049, NCTC7927_00544, NCTC8009_01504, NCTC8179_05935, NCTC8333_00482, NCTC8500_00327, NCTC8621_00501, NCTC8622_00513, NCTC8960_03063, NCTC8985_04975, NCTC9044_01365, NCTC9045_00558, NCTC9077_00597, NCTC9117_00749, NCTC9702_00530, NCTC9706_02730, NEP60_26330, O5851_12290, RG28_21650, SAMEA3752557_01959, TUM18780_04290, WR15_19645
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQZ7
#9: タンパク質 50S ribosomal protein L10 / 50S ribosomal protein L8 / Large ribosomal subunit protein uL10


分子量: 17736.596 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplJ, b3985, JW3948 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7J3
#39: タンパク質 50S ribosomal protein L11 / Large ribosomal subunit protein uL11


分子量: 14894.362 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplK, relC, b3983, JW3946 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7J7
#43: タンパク質 50S ribosomal protein L28


分子量: 9027.551 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmB, ECVG_03476 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A1X3JA73
#46: タンパク質 50S ribosomal protein L30


分子量: 6554.820 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmD, A5U30_004536, A6592_25715, A8499_003316, A8502_004039, A9X72_02265, AC065_15925, ACN81_25440, ACU57_21040, AM464_09140, APX88_16155, AW118_24820, AWP47_12725, B6R12_002823, B6R15_ ...遺伝子: rpmD, A5U30_004536, A6592_25715, A8499_003316, A8502_004039, A9X72_02265, AC065_15925, ACN81_25440, ACU57_21040, AM464_09140, APX88_16155, AW118_24820, AWP47_12725, B6R12_002823, B6R15_004085, B6R17_004958, B6R31_004984, B6R48_005051, B6R87_004961, BANRA_04312, BB540_01660, BER14_25110, BF481_004946, BG944_001117, BGM66_003609, BHS81_19755, BJI68_08755, BJJ90_02205, BK292_20425, BK383_24725, BKL28_004559, BMT50_12295, BMT91_19990, BR158_003774, BTB68_004372, BTQ06_10610, BUO55_004713, BvCmsKKP061_03014, BvCmsSIP010_02669, BXT93_05555, BZL69_25950, C0P57_002652, C1Q91_004920, C2121_004178, C2M16_25485, C2R31_004617, C3F40_19800, C5N07_23570, C9E67_02805, C9Z68_22555, CA593_09730, CCS08_00135, CCU84_002918, CDL36_25590, CF22_004865, CG692_20265, CG704_20950, CG831_003633, CIG67_10755, CQ986_004897, CQB02_00630, CR538_02500, CR539_21820, CR628_001350, CRM83_22925, CTR35_003614, CV83915_02796, CWS33_24860, CX938_003815, CY655_21240, D1912_11425, D3G36_23130, D4M65_20575, D4N09_20175, D6T60_05695, D9D43_22630, D9E34_23605, D9E49_05160, D9H94_20830, D9J03_20055, D9J61_16655, DD762_23550, DIV22_15255, DNQ45_03760, DNX30_25475, DS732_24265, DTL43_20995, DTL90_24695, DTM45_24550, DU321_12005, E0I52_20145, E4K51_21495, E5H86_24520, E6D34_21755, EA239_22795, EAI46_07480, EB534_RS01705, EC95NR1_02693, ECs4167, EIA08_23960, EIZ93_12465, EN85_004365, EPS76_07210, EPS97_20090, ERS085406_04406, ERS139208_04354, EWK56_25000, ExPECSC038_03656, F3P10_05565, F7F11_22720, F7N46_24005, F9413_21230, F9461_25650, F9B07_24680, FA868_22750, FEJ01_22510, FFF58_25450, FGG80_25130, FHD44_21270, FHQ97_20115, FIJ20_21190, FJQ40_18310, FKO60_25640, FN993_004711, FOI11_019255, FOI11_03925, FPI65_20310, FPS11_25425, FTV92_20710, FTV93_20895, FV293_22460, FVB16_04875, FWK02_06275, FZN31_02630, FZU14_21825, G3V95_19850, G3W53_20960, G4A38_21515, G4A47_20785, G5603_24590, G9448_17070, GAI89_24825, GAJ12_24715, GAJ26_22015, GGB84_004467, GIB53_19395, GJ11_21390, GKF52_21245, GKF66_21550, GKF89_18475, GNW61_16635, GOP14_004273, GOP25_22710, GP711_23310, GP954_00940, GP965_04300, GP975_01190, GP979_02000, GQA06_03945, GQM04_10570, GQM13_25205, GQM17_19920, GQM21_11235, GQN34_23270, GQW07_21545, GRO95_20810, GRW05_09065, GRW24_04750, GRW56_00300, GRW57_03535, GSM54_23325, GSY44_20005, GUC01_21185, GUI33_20050, H0O53_20825, H0O72_19420, H0P11_20920, H5Z35_004789, H6Y26_003164, HCQ42_003948, HEP30_018640, HEP34_004770, HHH44_004535, HI055_004140, HIE29_005187, HJY54_004753, HKA49_005035, HLQ92_22595, HLV18_23335, HLX92_10070, HLZ50_22175, HMV95_19610, HMW38_23110, HV109_02185, HV146_21675, HV209_14710, HVV39_09270, HVW04_17530, HVW43_18665, HVY77_02170, HVZ29_19100, HVZ30_02050, HVZ71_02355, HX136_02190, I6H00_20920, I6H02_11995, IFB95_004806, IUD45_003540, J0541_004397, J4S20_004802, J5U05_004087, J7T50_001453, JFD_01884, JFD_03713, JNP96_25310, KQ660_11775, NCTC10082_02839, NCTC10089_00502, NCTC10090_03527, NCTC10418_00690, NCTC10429_01095, NCTC10487_00445, NCTC10764_03863, NCTC10767_01516, NCTC10865_00661, NCTC10974_00551, NCTC11126_02771, NCTC11127_03223, NCTC11181_02738, NCTC11341_01889, NCTC12950_00479, NCTC13127_00786, NCTC4450_02475, NCTC7922_04042, NCTC7927_00551, NCTC7928_02516, NCTC8009_01511, NCTC8179_05942, NCTC8333_00489, NCTC8450_04937, NCTC8500_00335, NCTC8621_00508, NCTC8622_00507, NCTC8959_03261, NCTC8960_03070, NCTC8985_04982, NCTC9001_04254, NCTC9044_01356, NCTC9045_00566, NCTC9050_03611, NCTC9071_00483, NCTC9073_00380, NCTC9075_00724, NCTC9077_00604, NCTC9081_00918, NCTC9111_00867, NCTC9117_00756, NCTC9702_00537, NCTC9706_02737, NCTC9775_04003, NCTC9777_01891, NEP60_26295, OS110_25120, RG28_21615, SAMEA3472044_01162, SAMEA3472056_05411, SAMEA3752557_01952, SAMEA3753106_04634, TUM18780_04360, WR15_19610
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SR32
#47: タンパク質 50S ribosomal protein L31 / Large ribosomal subunit protein bL31-A


分子量: 7887.117 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmE, b3936, JW3907 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7M9
#48: タンパク質 50S ribosomal protein L2 / Large ribosomal subunit protein uL2


分子量: 29923.619 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplB, b3317, JW3279 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60422
#49: タンパク質 50S ribosomal protein L32


分子量: 6463.445 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmF, rpmF_1, A5U30_002830, A8502_000661, A9X72_15435, ACN81_09130, ACU57_04225, AM464_23480, AW118_12110, AWP47_13180, B6R15_001792, B6R31_003138, BANRA_01624, BCB93_002043, BER14_10210, ...遺伝子: rpmF, rpmF_1, A5U30_002830, A8502_000661, A9X72_15435, ACN81_09130, ACU57_04225, AM464_23480, AW118_12110, AWP47_13180, B6R15_001792, B6R31_003138, BANRA_01624, BCB93_002043, BER14_10210, BF481_002131, BG944_003607, BGM66_002729, BJI68_20640, BJJ90_15780, BK292_02505, BK383_03640, BKL28_002219, BTB68_003153, BTQ06_08080, BvCmsKKP061_02173, BvCmsSIP010_04163, BXT93_21825, C0P57_001747, C1Q91_003167, C2121_002257, C2M16_23600, C2R31_002348, C3F40_06530, C9E67_18185, C9Z68_07340, CA593_23040, CF22_003088, CG692_05970, CG704_04105, CG831_001542, CIG67_21935, CQ986_001084, CR538_15635, CR539_10135, CR628_002785, CTR35_002374, CV83915_00494, CY655_06595, D1912_08350, D3C88_19355, D3G36_11860, D4M65_04795, D4N09_11015, D9D43_11825, D9E49_23135, D9J61_04035, DD762_03625, DIV22_29035, DNQ45_10015, DNX30_12140, DQ87_002042, DS732_10505, DTL43_16270, DU321_22840, E4K51_18340, E5H86_12535, E6D34_10935, EAI46_03975, EC95NR1_05485, ECs1467, EEP55_000822, EIA08_02925, EIZ93_13150, EN85_002840, EPS76_00770, EPS97_06370, EWK56_20060, ExPECSC038_03490, F7F11_10320, F7N46_02450, F9413_18150, F9461_13585, F9B07_16900, FEJ01_12565, FIJ20_07300, FJQ40_00940, FKO60_17370, FOI11_007500, FOI11_14470, FPI65_06540, FPS11_20235, FTV92_08325, FTV93_08485, FV293_19565, FVB16_04695, FWK02_15570, FZN31_14620, FZU14_20010, G3V95_08050, G3W53_15755, G4A38_16050, G4A47_15410, G5603_00600, G8C01_10030, G9448_05130, GAI89_13280, GAJ12_13930, GGB84_000483, GJ11_06555, GKF66_05180, GNW61_10640, GOP25_17405, GP711_16475, GP954_12815, GP965_04045, GP975_03585, GP979_13150, GQA06_08430, GQM04_02110, GQM13_14340, GQM21_06935, GQN34_10245, GQW07_08880, GRO95_10420, GRW05_02410, GRW24_27585, GRW56_06550, GRW57_07595, GTP92_19120, GUC01_01680, H0O72_16850, HCQ42_001914, HEP30_011955, HEP34_001075, HHH44_003019, HI055_001485, HIE29_000052, HJQ60_005092, HLX92_03690, HLZ50_01830, HMV95_16370, HV109_14610, HV146_09250, HV209_29060, HVV39_00410, HVW04_05590, HVW43_06430, HVY77_15765, HVZ29_08715, HX086_07035, HX136_15650, I0E88_003516, I6H00_08540, I6H02_24530, IFB95_003696, IUC12_000121, J0541_003169, J5U05_002959, JNP96_10710, KV259_001392, KV317_003230, KV371_000953, KV406_001102, KV449_001342, KV455_003227, KV463_001049, KV469_000542, KV499_000679, KV500_001199, NCTC10082_00641, NCTC10089_03005, NCTC10090_00680, NCTC10418_04509, NCTC10764_02647, NCTC10767_05044, NCTC10865_03684, NCTC10974_03416, NCTC11126_00919, NCTC11181_00164, NCTC11341_04894, NCTC12950_03296, NCTC13148_05706, NCTC4450_04127, NCTC7922_00634, NCTC7927_03385, NCTC7928_00455, NCTC8009_05657, NCTC8179_02874, NCTC8333_03590, NCTC8621_03238, NCTC8622_05813, NCTC8959_00826, NCTC8960_00763, NCTC8985_01747, NCTC9044_04397, NCTC9045_03550, NCTC9073_01975, NCTC9075_04022, NCTC9077_03763, NCTC9081_03511, NCTC9117_03837, NCTC9706_00412, NCTC9962_06984, NEP60_22810, O5851_21660, RG28_16890, SAMEA3752557_01555, TUM18780_25170, WR15_23855
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TE02
#50: タンパク質 50S ribosomal protein L3 / Large ribosomal subunit protein uL3


分子量: 22277.535 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplC, b3320, JW3282 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60438
#51: タンパク質 50S ribosomal protein L33


分子量: 6388.631 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmG, rpmG_1, A5U30_004136, A6592_21955, A8499_000792, A8502_002345, A9X72_00400, AC065_17670, ACN81_07125, ACU57_07205, AM464_10960, APX88_07835, AW118_10740, AWP47_15985, B6R12_001909, ...遺伝子: rpmG, rpmG_1, A5U30_004136, A6592_21955, A8499_000792, A8502_002345, A9X72_00400, AC065_17670, ACN81_07125, ACU57_07205, AM464_10960, APX88_07835, AW118_10740, AWP47_15985, B6R12_001909, B6R15_003224, B6R17_003336, B6R31_002865, B6R48_003283, B6R87_003156, BANRA_04677, BB540_10150, BER14_16165, BF481_000671, BG944_002239, BGM66_003973, BHS81_21690, BJI68_21710, BJJ90_00390, BK292_09690, BK383_09650, BKL28_001549, BMT50_10565, BMT91_13845, BR158_003843, BTB68_002398, BTQ06_17850, BUO55_001749, BvCmsKKP061_03496, BvCmsSIP010_04504, BXT93_06220, BZL69_22230, C0P57_003843, C1Q91_001907, C2121_003322, C2M16_17175, C2R31_004081, C3F40_17705, C5N07_22255, C9E67_00890, C9Z68_15420, CA593_07900, CCS08_06865, CCU84_004237, CDL36_16035, CF22_002026, CG692_01875, CG704_10010, CG831_000991, CIG67_03795, CQ986_000108, CQB02_22645, CR538_00630, CR539_23800, CR628_001528, CRM83_20955, CTR35_001077, CV83915_02464, CWS33_14490, CX938_000998, CY655_23100, D3C88_33140, D3G36_09395, D4M65_14910, D4N09_11500, D6T60_21010, D9D43_20690, D9E34_16170, D9E49_10195, D9H94_14645, D9J03_19890, D9J61_14005, DD762_15060, DIV22_25130, DNQ45_17840, DNX30_21910, DS732_26145, DTL43_17805, DTL90_19180, DTM45_13255, DU321_24275, E0I52_14235, E4K51_19990, E5H86_15640, E6D34_14175, EA239_11595, EB534_RS18180, EC95NR1_03037, ECs4511, EIA08_13065, EIMP300_11190, EIZ93_22910, EN85_002943, EPS76_16410, EPS97_14120, ERS085406_02634, ERS139208_03027, EWK56_19235, ExPECSC038_00886, F3P10_10725, F7F11_22995, F7N46_06895, F9413_20155, F9461_04500, F9B07_09850, FA868_19515, FEJ01_05435, FFF58_21805, FGG80_07720, FHD44_20765, FHQ97_14415, FIJ20_14735, FJQ40_22750, FKO60_20795, FN993_001905, FOI11_017545, FOI11_05635, FPI65_22380, FPS11_15665, FTV92_18865, FTV93_19030, FV293_17885, FVB16_08575, FWK02_20790, FZN31_00850, FZU14_11310, G3V95_06555, G3W53_09755, G4A38_07645, G4A47_07035, G5603_14155, G9448_15395, GAI89_21025, GAJ12_25750, GAJ26_19905, GGB84_002816, GIB53_07680, GJ11_23260, GKF52_07040, GKF66_06090, GKF89_01305, GNW61_15010, GOP14_002925, GOP25_22240, GP711_14020, GP965_18420, GP975_06785, GQM04_18880, GQM13_19245, GQM17_16535, GQM21_20675, GQN34_13365, GQW07_04785, GRO95_05820, GRW05_17070, GRW24_04500, GRW56_13140, GRW57_14295, GSM54_05345, GSY44_19835, GUC01_19125, GUI33_04785, H0O53_07375, H0O72_08715, H0P11_12255, H5Z35_003529, H6Y26_001161, HCQ42_003479, HEP30_004320, HEP34_000581, HHH44_001955, HI055_001939, HIE29_002315, HJQ60_004388, HJY54_003834, HKA49_003561, HLQ92_16260, HLV18_18020, HLX92_21165, HLZ50_07765, HMV95_17960, HMW38_12345, HV109_00345, HV146_00330, HV209_24710, HVV39_10960, HVW04_15855, HVW43_16870, HVY77_00425, HVZ29_00305, HVZ30_00460, HVZ71_00385, HX136_00340, I6H00_19205, I6H02_13660, IFB95_001325, IUD45_003655, J0541_001519, J4S20_003173, J5U05_003670, J7T50_004317, JFD_02865, JFD_02951, JNP96_26980, KQ660_13480, NCTC10082_02483, NCTC10089_00164, NCTC10090_03179, NCTC10418_00180, NCTC10429_00616, NCTC10487_00103, NCTC10764_03481, NCTC10767_01151, NCTC10865_00201, NCTC10974_00127, NCTC11112_01599, NCTC11126_01709, NCTC11127_03609, NCTC11181_02394, NCTC11341_02337, NCTC12950_00092, NCTC13127_00380, NCTC4450_02132, NCTC7922_04520, NCTC7927_00189, NCTC7928_02970, NCTC8009_00971, NCTC8179_05536, NCTC8333_00121, NCTC8450_04550, NCTC8500_05792, NCTC8621_00171, NCTC8959_03599, NCTC8960_02723, NCTC8985_04527, NCTC9001_03782, NCTC9044_01835, NCTC9045_00169, NCTC9050_03266, NCTC9071_00140, NCTC9073_06389, NCTC9075_00237, NCTC9077_00137, NCTC9081_00502, NCTC9111_00516, NCTC9117_00296, NCTC9702_00106, NCTC9706_02375, NCTC9775_03637, NCTC9777_01519, NCTC9962_01072, NEP60_12970, OS110_19615, RG28_23350, SAMEA3472044_00655, SAMEA3472056_04704, SAMEA3752557_01144, SAMEA3753106_03495, TUM18780_00760, WR15_15810
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SME7
#53: タンパク質・ペプチド 50S ribosomal protein L34


分子量: 5397.463 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmH / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MGC4
#55: タンパク質 50S ribosomal protein L35 / Large ribosomal subunit protein bL35 / Ribosomal protein A


分子量: 7313.032 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmI, b1717, JW1707 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7Q1
#57: タンパク質・ペプチド 50S ribosomal protein L36


分子量: 4377.390 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmJ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2L017
#62: タンパク質 50S ribosomal protein L16 / Large ribosomal subunit protein uL16


分子量: 15312.269 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplP, b3313, JW3275 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0ADY7
#66: タンパク質 50S ribosomal protein L20


分子量: 13528.024 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplT / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MAS6

+
Large ribosomal subunit protein ... , 14種, 14分子 4Zbelnprstuwxy

#5: タンパク質 Large ribosomal subunit protein bL25


分子量: 10713.465 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplY / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P68919
#40: タンパク質 Large ribosomal subunit protein bL12


分子量: 12309.155 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rplL, A2J79_004435, A5U30_004587, ABE91_020830, ACU57_23195, AWP47_16720, B6R15_000402, B6R31_004824, BANRA_00090, BANRA_02961, BANRA_05058, BCB93_004499, BG944_004750, BGM66_002188, BK300_ ...遺伝子: rplL, A2J79_004435, A5U30_004587, ABE91_020830, ACU57_23195, AWP47_16720, B6R15_000402, B6R31_004824, BANRA_00090, BANRA_02961, BANRA_05058, BCB93_004499, BG944_004750, BGM66_002188, BK300_15065, BK383_27730, BKL28_004341, BMT50_08100, BMT91_03295, BRV02_004441, BTB68_004075, BTQ06_27275, BvCmsKKP061_02984, BXT93_25165, C0P57_003016, C1Q91_004814, C2M16_25120, C2R31_004868, C3F40_15470, C6669_07605, C719_004809, C7B02_25775, C9160_23390, C9194_21585, C9Z68_22025, CCS08_08130, CF22_004729, CG702_19645, CIG67_06960, CQ842_10390, CQ842_21780, CR538_24220, CTR35_004064, CWS33_24560, D3G36_22415, D4M65_19265, D4N09_21560, D9D43_22305, D9E49_24265, D9J61_19505, DD762_22290, DIV22_03735, DL968_14800, DNQ45_05175, DNX30_24155, DS732_01540, DTL43_13710, DU321_23435, E2863_04083, E4K51_22910, E5H86_23035, E6D34_20870, EAI46_11705, ECs4909, EIA08_23400, EIZ93_16325, EN85_004183, EPS76_13580, EPS97_19160, EWK56_25660, ExPECSC038_04329, EXX87_24990, F7F11_23825, F7N46_22870, F9413_20755, F9461_25100, F9B07_23660, FGAF848_44570, FIJ20_20100, FJQ40_20825, FKO60_24825, FOI11_015720, FOI11_24360, FPI65_24515, FPS11_24515, FTV93_16950, FV293_23420, FVB16_05300, FZU14_22845, G3V95_20440, G3W53_22325, G4A38_22930, G4A47_22790, G5603_24110, GAI89_24235, GAJ12_23545, GKF66_20535, GNW61_19020, GNZ05_25250, GOP25_23370, GP711_23605, GP944_20380, GP954_05265, GP965_06580, GP975_06490, GP979_07410, GQA06_03460, GQM04_07510, GQM21_14975, GQN24_22100, GRC73_22180, GRW05_10065, GRW24_04155, GTP92_22605, GUC01_23015, HEP30_021885, HEP34_005295, HHH44_004415, HI055_004309, HIE29_005266, HJQ60_004918, HKA49_004954, HLX92_23675, HLZ39_21235, HLZ50_21720, HMV95_21220, HV109_22430, HV209_21200, HVV39_13130, HVW04_13840, HVW43_14990, HVY77_24380, HX136_23645, I6H02_15710, IFC14_004534, IH772_15225, J0541_004715, J5U05_003961, J8F57_004531, JNA68_24645, JNP96_01270, NCTC10082_02083, NCTC10279_03474, NCTC10429_00090, NCTC10764_02974, NCTC10865_05897, NCTC10974_05353, NCTC11112_02279, NCTC11126_05452, NCTC11181_01967, NCTC11341_02772, NCTC7922_04997, NCTC7927_05251, NCTC7928_03628, NCTC8009_08435, NCTC8179_05098, NCTC8333_05560, NCTC8500_05327, NCTC8603_04078, NCTC8621_04874, NCTC8622_01626, NCTC8960_02342, NCTC8985_04032, NCTC9001_04471, NCTC9044_02302, NCTC9045_05544, NCTC9075_06429, NCTC9077_05938, NCTC9117_05906, NCTC9702_05641, NCTC9706_02005, NCTC9962_06032, NOI85_25205, NY836_12435, OFN31_22165, OGM49_00570, P6223_004405, PWL68_004987, Q2V20_25675, Q2V64_25165, QDW62_24500, QO046_17555, R8G00_17440, R8O40_005074, RZR61_19910, SAMEA3472044_04876, SAMEA3752557_04841, V9Z47_24995, WR15_01480
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SIB2
#42: タンパク質 Large ribosomal subunit protein bL27


分子量: 9146.540 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpmA / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7M0
#45: タンパク質 Large ribosomal subunit protein uL29


分子量: 7286.464 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpmC, A5U30_004546, A8502_004029, ACN81_25490, ACU57_20990, AW118_24870, AWP47_12675, B6R15_004075, B6R31_004974, BANRA_01943, BANRA_04322, BE932_15505, BER14_25160, BG944_001127, BGM66_ ...遺伝子: rpmC, A5U30_004546, A8502_004029, ACN81_25490, ACU57_20990, AW118_24870, AWP47_12675, B6R15_004075, B6R31_004974, BANRA_01943, BANRA_04322, BE932_15505, BER14_25160, BG944_001127, BGM66_003599, BGZ_02596, BGZ_04119, BJI68_08705, BK292_20475, BK383_24675, BKL28_004549, BTB68_004362, BTQ06_10660, BvCmsKKP061_03024, BvCmsSIP010_02679, BXT93_05505, C0P57_002662, C1Q91_004910, C2121_004168, C2M16_25435, C2R31_004627, C3F40_19750, C9Z68_22605, CF22_004855, CG704_20900, CG831_003643, CIG67_10705, CTR35_003624, CV83915_02786, D3G36_23080, D4M65_20625, D4N09_20225, D9D43_22580, D9E49_05210, D9J61_16705, DD762_23600, DIV22_15205, DNQ45_03810, DNX30_25425, DS732_24315, DTL43_20945, DU321_12055, E4K51_21545, E5H86_24470, E6D34_21705, EAI46_07530, ECs4177, EIA08_24010, EIMP300_17750, EIZ93_12415, EN85_004355, EPS76_07160, EPS97_20040, EWK56_25050, ExPECSC038_03646, F7F11_22670, F7N46_23955, F9413_21180, F9461_25600, F9B07_24630, FGAF848_25910, FIJ20_21140, FJQ40_18360, FKO60_25690, FOI11_019205, FOI11_03975, FORC44_0486, FPI65_20360, FPS11_25375, FTV93_20845, FVB16_04925, FWK02_06325, FZU14_21875, G3V95_19900, G3W53_21010, G4A38_21565, G4A47_20835, G5603_24640, GAI89_24775, GAJ12_24665, GKF66_21600, GNW61_16685, GOP25_22760, GP711_23360, GP954_00890, GP965_04350, GP975_01240, GP979_01950, GQA06_03895, GQE86_20135, GQM04_10620, GQM13_25255, GQM21_11285, GQN34_23320, GQW07_21495, GRC73_21695, GRO95_20760, GRW05_09115, GRW24_04700, GRW56_00350, GRW57_03485, GUC01_21235, H0O72_19470, HEP30_018690, HEP34_004760, HHH44_004525, HI055_004150, HIE29_005197, HJQ60_005001, HLX92_10020, HLZ50_22125, HMV95_19660, HV109_02135, HV209_14660, HVV39_09320, HVW04_17480, HVW43_18615, HVY77_02120, I6H00_20870, I6H02_12045, IFB95_004816, J0541_004407, J5U05_004077, JNP96_25360, KV499_004411, NCTC10082_02829, NCTC10089_00492, NCTC10418_00681, NCTC10429_01084, NCTC10764_03853, NCTC10767_01506, NCTC10865_00649, NCTC10974_00539, NCTC11126_02760, NCTC11181_02728, NCTC11341_01899, NCTC7922_04052, NCTC7927_00541, NCTC7928_02527, NCTC8009_01501, NCTC8179_05932, NCTC8333_00479, NCTC8500_00324, NCTC8621_00498, NCTC8622_00516, NCTC8959_03271, NCTC8960_03060, NCTC8985_04972, NCTC9001_04244, NCTC9044_01368, NCTC9045_00555, NCTC9075_00714, NCTC9077_00594, NCTC9081_00907, NCTC9117_00746, NCTC9702_00527, NCTC9706_02727, NCTC9962_06787, NEP60_26345, OGM49_22385, QDW62_02140, RZR61_12945, SAMEA3472112_00683, SAMEA3752557_01962, WR15_19660
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQY2
#52: タンパク質 Large ribosomal subunit protein uL4 / 50S ribosomal protein L4


分子量: 22121.566 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplD, eryA, b3319, JW3281 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P60723
#54: タンパク質 Large ribosomal subunit protein uL5 / 50S ribosomal protein L5


分子量: 20333.611 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplE, b3308, JW3270 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P62399
#56: タンパク質 Large ribosomal subunit protein uL6 / 50S ribosomal protein L6


分子量: 18932.791 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplF, b3305, JW3267 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AG55
#58: タンパク質 Large ribosomal subunit protein bL9 / 50S ribosomal protein L9


分子量: 15789.020 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplI, b4203, JW4161 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7R1
#59: タンパク質 Large ribosomal subunit protein uL13 / 50S ribosomal protein L13


分子量: 16050.606 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplM, b3231, JW3200 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AA10
#60: タンパク質 Large ribosomal subunit protein uL14 / 50S ribosomal protein L14


分子量: 13565.067 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplN, b3310, JW3272 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0ADY3
#61: タンパク質 Large ribosomal subunit protein uL15 / 50S ribosomal protein L15


分子量: 15008.471 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplO, b3301, JW3263 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02413
#63: タンパク質 Large ribosomal subunit protein bL17 / 50S ribosomal protein L17


分子量: 14393.657 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplQ, b3294, JW3256 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AG44
#64: タンパク質 Large ribosomal subunit protein uL18 / 50S ribosomal protein L18


分子量: 12794.668 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplR, b3304, JW3266 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0C018
#65: タンパク質 Large ribosomal subunit protein bL19


分子量: 13159.278 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rplS / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7K8

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DNA鎖 , 2種, 2分子 56

#6: DNA鎖 NT DNA


分子量: 11042.110 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) synthetic construct (人工物) / 発現宿主: synthetic construct (人工物)
#7: DNA鎖 T DNA


分子量: 10956.012 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) synthetic construct (人工物) / 発現宿主: synthetic construct (人工物)

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RNA鎖 , 5種, 6分子 7ABDad

#8: RNA鎖 mRNA with 60 nt long spacer


分子量: 23934.291 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) synthetic construct (人工物) / 発現宿主: synthetic construct (人工物)
#10: RNA鎖 E-site and P-site tRNA (fMet)


分子量: 24496.617 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1870104878
#18: RNA鎖 16S rRNA


分子量: 499690.031 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1732209707
#41: RNA鎖 23S rRNA


分子量: 941635.438 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 937521852
#44: RNA鎖 5S rRNA


分子量: 38790.090 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 発現宿主: Escherichia coli (大腸菌) / 参照: GenBank: 1273279017

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DNA-directed RNA polymerase subunit ... , 4種, 5分子 AAACADAEAF

#11: タンパク質 DNA-directed RNA polymerase subunit beta / RNAP subunit beta / RNA polymerase subunit beta / Transcriptase subunit beta


分子量: 150820.875 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌)
遺伝子: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A8V2, DNA-directed RNA polymerase
#13: タンパク質 DNA-directed RNA polymerase subunit alpha / RNAP subunit alpha / RNA polymerase subunit alpha / Transcriptase subunit alpha


分子量: 36558.680 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpoA, pez, phs, sez, b3295, JW3257 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7Z4, DNA-directed RNA polymerase
#14: タンパク質 DNA-directed RNA polymerase subunit beta' / RNAP subunit beta' / RNA polymerase subunit beta' / Transcriptase subunit beta'


分子量: 155366.781 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpoC, tabB, b3988, JW3951 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A8T7, DNA-directed RNA polymerase
#15: タンパク質 DNA-directed RNA polymerase subunit omega / RNAP omega subunit / RNA polymerase omega subunit / Transcriptase subunit omega


分子量: 10249.547 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpoZ, b3649, JW3624 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A800, DNA-directed RNA polymerase

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Transcription termination/antitermination protein ... , 2種, 2分子 ABAG

#12: タンパク質 Transcription termination/antitermination protein NusG


分子量: 20560.523 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: nusG, Z5555, ECs4905 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AFG1
#16: タンパク質 Transcription termination/antitermination protein NusA


分子量: 54932.684 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: nusA / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AFF8

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Small ribosomal subunit protein ... , 18種, 18分子 CEFHIJKLMNOPSTUVWX

#17: タンパク質 Small ribosomal subunit protein bS18


分子量: 9005.472 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsR / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2KXL3
#19: タンパク質 Small ribosomal subunit protein bS20


分子量: 9708.464 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsT / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TRH7
#20: タンパク質 Small ribosomal subunit protein bS21


分子量: 8524.039 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsU / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A0E2L2J1
#22: タンパク質 Small ribosomal subunit protein bS1 / 30S ribosomal protein S1


分子量: 61238.887 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsA, Z1257, ECs0994 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0AG69
#23: タンパク質 Small ribosomal subunit protein uS3


分子量: 26031.316 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsC / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MCS9
#24: タンパク質 Small ribosomal subunit protein uS4


分子量: 23514.199 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsD, ramA, b3296, JW3258 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7V8
#25: タンパク質 Small ribosomal subunit protein uS5


分子量: 17629.398 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsE, spc, b3303, JW3265 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7W1
#26: タンパク質 Small ribosomal subunit protein bS6


分子量: 15727.512 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsF, b4200, JW4158 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02358
#27: タンパク質 Small ribosomal subunit protein uS7


分子量: 20055.156 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsG, b3341, JW3303 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P02359
#28: タンパク質 Small ribosomal subunit protein uS8


分子量: 14146.557 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsH / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SR12
#29: タンパク質 Small ribosomal subunit protein uS9


分子量: 14886.270 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsI / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SRY2
#30: タンパク質 Small ribosomal subunit protein uS10


分子量: 11755.597 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsJ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQT7
#33: タンパク質 Small ribosomal subunit protein uS14


分子量: 11606.560 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsN, NCTC9073_00385 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A2X1PQW4
#34: タンパク質 Small ribosomal subunit protein uS15


分子量: 10290.816 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsO / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SSQ7
#35: タンパク質 Small ribosomal subunit protein bS16


分子量: 9207.572 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsP / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SYP2
#36: タンパク質 Small ribosomal subunit protein uS17


分子量: 9724.491 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsQ / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQY7
#37: タンパク質 Small ribosomal subunit protein uS19


分子量: 10455.355 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsS / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3SQW2
#38: タンパク質 Small ribosomal subunit protein uS13


分子量: 13128.467 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsM, G711_03878 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A7U9IV78

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30S ribosomal protein ... , 3種, 3分子 GQR

#21: タンパク質 30S ribosomal protein S2


分子量: 26781.670 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsB / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: C3TPN2
#31: タンパク質 30S ribosomal protein S11


分子量: 13870.975 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsK / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: B7MCR3
#32: タンパク質 30S ribosomal protein S12


分子量: 13768.157 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli (大腸菌) / 遺伝子: rpsL, strA, b3342, JW3304 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P0A7S3

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非ポリマー , 2種, 3分子

#67: 化合物 ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 1 / 由来タイプ: 合成 / 式: Mg
#68: 化合物 ChemComp-ZN / ZINC ION


分子量: 65.409 Da / 分子数: 2 / 由来タイプ: 合成 / 式: Zn

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詳細

研究の焦点であるリガンドがあるかN
Has protein modificationY

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実験情報

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実験

実験手法: 電子顕微鏡法
EM実験試料の集合状態: PARTICLE / ３次元再構成法: 単粒子再構成法

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試料調製

構成要素名称: Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
タイプ: COMPLEX / Entity ID: #1-#66 / 由来: NATURAL
分子量実験値: NO
由来(天然)生物種: Escherichia coli (大腸菌)
緩衝液pH: 7.5
試料包埋: NO / シャドウイング: NO / 染色: NO / 凍結: YES
急速凍結凍結剤: ETHANE

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電子顕微鏡撮影

実験機器
モデル: Talos Arctica / 画像提供: FEI Company
顕微鏡モデル: FEI TALOS ARCTICA
電子銃電子線源: FIELD EMISSION GUN / 加速電圧: 200 kV / 照射モード: FLOOD BEAM
電子レンズモード: BRIGHT FIELD / 最大 デフォーカス（公称値）: 2500 nm / 最小 デフォーカス（公称値）: 1250 nm
撮影電子線照射量: 50 e/Å2
フィルム・検出器のモデル: GATAN K2 SUMMIT (4k x 4k)

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解析

CTF補正タイプ: PHASE FLIPPING AND AMPLITUDE CORRECTION
3次元再構成解像度: 4.6 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 粒子像の数: 32821 / 対称性のタイプ: POINT

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る