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Open data
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Basic information
Entry | Database: PDB / ID: 8v5z | ||||||
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Title | UIC-1 mutant - UIC-1-L6M | ||||||
![]() | UIC-1-L6M | ||||||
![]() | DE NOVO PROTEIN / synthetic construct | ||||||
Function / homology | ACETONITRILE![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Heinz-Kunert, S.L. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Pore Restructuring of Peptide Frameworks by Mutations at Distal Packing Residues. Authors: Heinz-Kunert, S.L. / Pandya, A. / Dang, V.T. / Oktawiec, J. / Nguyen, A.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 20 KB | Display | ![]() |
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PDB format | ![]() | 11 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 8v56C ![]() 8v59C ![]() 8v5wC ![]() 8v5xC ![]() 8v61C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein/peptide | Mass: 1392.627 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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#2: Chemical | ChemComp-CCN / |
#3: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.49 Å3/Da / Density % sol: 17.59 % |
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Crystal grow | Temperature: 298 K / Method: slow cooling / Details: water, acetonitrile |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Oct 23, 2023 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.6888 Å / Relative weight: 1 |
Reflection | Resolution: 0.84→16.25 Å / Num. obs: 6645 / % possible obs: 80.28 % / Redundancy: 5.8 % / Biso Wilson estimate: 4.36 Å2 / CC1/2: 0.985 / CC star: 0.996 / Rmerge(I) obs: 0.1341 / Rrim(I) all: 0.1469 / Net I/σ(I): 8.72 |
Reflection shell | Resolution: 0.84→0.87 Å / Rmerge(I) obs: 0.44 / Mean I/σ(I) obs: 3.83 / Num. unique obs: 614 / CC1/2: 0.841 / CC star: 0.956 / Rrim(I) all: 0.4893 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 6.58 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.84→16.25 Å
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Refine LS restraints |
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LS refinement shell |
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