Entry | Database: PDB / ID: 8u9l |
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Title | Crystal Structure of RelA-cRel chimera complex with DNA |
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Components | - DNA (5'-D(P*GP*AP*AP*TP*CP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*AP*TP*CP*AP*A)-3')
- DNA (5'-D(P*TP*TP*GP*AP*TP*GP*GP*GP*AP*AP*TP*TP*TP*CP*CP*GP*AP*TP*TP*C)-3')
- Transcription factor p65,Proto-oncogene c-Rel chimera
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Keywords | DNA BINDING PROTEIN/DNA / Vertebrate Evolution / transcription factor / DNA BINDING PROTEIN / DNA BINDING PROTEIN-DNA complex |
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Function / homology | Function and homology information
SUMOylation of immune response proteins / Regulated proteolysis of p75NTR / Interleukin-1 processing / DEx/H-box helicases activate type I IFN and inflammatory cytokines production / RIP-mediated NFkB activation via ZBP1 / TRAF6 mediated NF-kB activation / NF-kB is activated and signals survival / PKMTs methylate histone lysines / Activation of NF-kappaB in B cells / TAK1-dependent IKK and NF-kappa-B activation ...SUMOylation of immune response proteins / Regulated proteolysis of p75NTR / Interleukin-1 processing / DEx/H-box helicases activate type I IFN and inflammatory cytokines production / RIP-mediated NFkB activation via ZBP1 / TRAF6 mediated NF-kB activation / NF-kB is activated and signals survival / PKMTs methylate histone lysines / Activation of NF-kappaB in B cells / TAK1-dependent IKK and NF-kappa-B activation / Turbulent (oscillatory, disturbed) flow shear stress activates signaling by PIEZO1 and integrins in endothelial cells / FCERI mediated NF-kB activation / CLEC7A (Dectin-1) signaling / Interleukin-1 signaling / Downstream TCR signaling / prolactin signaling pathway / NF-kappaB p50/p65 complex / toll-like receptor TLR6:TLR2 signaling pathway / positive regulation of Schwann cell differentiation / response to cobalamin / CD209 (DC-SIGN) signaling / cellular response to peptidoglycan / ankyrin repeat binding / postsynapse to nucleus signaling pathway / negative regulation of protein sumoylation / nucleotide-binding oligomerization domain containing 2 signaling pathway / defense response to tumor cell / cellular response to interleukin-6 / actinin binding / response to UV-B / non-canonical NF-kappaB signal transduction / negative regulation of non-canonical NF-kappaB signal transduction / positive regulation of leukocyte adhesion to vascular endothelial cell / interleukin-1-mediated signaling pathway / NF-kappaB complex / signal transduction involved in regulation of gene expression / vascular endothelial growth factor signaling pathway / toll-like receptor 4 signaling pathway / positive regulation of amyloid-beta formation / cellular response to hepatocyte growth factor stimulus / phosphate ion binding / positive regulation of T cell receptor signaling pathway / cellular response to lipoteichoic acid / response to muramyl dipeptide / positive regulation of vascular endothelial growth factor production / cellular response to angiotensin / general transcription initiation factor binding / response to cAMP / hair follicle development / canonical NF-kappaB signal transduction / neuropeptide signaling pathway / NF-kappaB binding / response to amino acid / RNA polymerase II core promoter sequence-specific DNA binding / response to muscle stretch / response to cytokine / positive regulation of interleukin-12 production / antiviral innate immune response / peptide binding / negative regulation of cytokine production involved in inflammatory response / negative regulation of insulin receptor signaling pathway / negative regulation of miRNA transcription / response to progesterone / negative regulation of angiogenesis / response to ischemia / animal organ morphogenesis / positive regulation of interleukin-1 beta production / tumor necrosis factor-mediated signaling pathway / negative regulation of extrinsic apoptotic signaling pathway / positive regulation of interleukin-8 production / RNA polymerase II transcription regulatory region sequence-specific DNA binding / response to bacterium / chromatin DNA binding / protein catabolic process / liver development / positive regulation of non-canonical NF-kappaB signal transduction / defense response / positive regulation of NF-kappaB transcription factor activity / negative regulation of protein catabolic process / response to insulin / positive regulation of miRNA transcription / positive regulation of interleukin-6 production / cellular response to nicotine / DNA-binding transcription repressor activity, RNA polymerase II-specific / histone deacetylase binding / transcription coactivator binding / cellular response to hydrogen peroxide / cellular response to tumor necrosis factor / chromatin organization / cellular response to lipopolysaccharide / regulation of inflammatory response / DNA-binding transcription activator activity, RNA polymerase II-specific / response to ethanol / transcription regulator complex / sequence-specific DNA binding / DNA-binding transcription factor activity, RNA polymerase II-specific / positive regulation of canonical NF-kappaB signal transduction / RNA polymerase II cis-regulatory region sequence-specific DNA binding / inflammatory response / response to xenobiotic stimulusSimilarity search - Function Proto-oncogene c-Rel, RHD, N-terminal subdomain / Transcription factor RelA (p65) / NF-kappa-B/Dorsal / Rel homology domain, conserved site / NFkappaB IPT domain / NF-kappa-B/Rel/dorsal domain signature. / Rel homology domain (RHD), DNA-binding domain / Rel homology dimerisation domain / Rel homology DNA-binding domain / Rel homology dimerisation domain ...Proto-oncogene c-Rel, RHD, N-terminal subdomain / Transcription factor RelA (p65) / NF-kappa-B/Dorsal / Rel homology domain, conserved site / NFkappaB IPT domain / NF-kappa-B/Rel/dorsal domain signature. / Rel homology domain (RHD), DNA-binding domain / Rel homology dimerisation domain / Rel homology DNA-binding domain / Rel homology dimerisation domain / NF-kappa-B/Rel/dorsal domain profile. / Rel homology domain (RHD), DNA-binding domain superfamily / ig-like, plexins, transcription factors / IPT domain / p53-like transcription factor, DNA-binding / Immunoglobulin E-set / Immunoglobulin-like foldSimilarity search - Domain/homology |
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Biological species |  Mus musculus (house mouse)
Homo sapiens (human) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.091 Å |
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Authors | Chang, A. / Wu, Y. / Li, S.X. / Smale, S. / Chen, L. |
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Funding support | United States, 1items Organization | Grant number | Country |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | | United States |
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Citation | Journal: Nat.Immunol. / Year: 2025 Title: Stepwise neofunctionalization of the NF-kappa B family member Rel during vertebrate evolution. Authors: Daly, A.E. / Chang, A.B. / Purbey, P.K. / Williams, K.J. / Li, S. / Redelings, B.D. / Yeh, G. / Wu, Y. / Pope, S.D. / Venkatesh, B. / Li, S. / Nguyen, K. / Rodrigues, J. / Jorgensen, K. / ...Authors: Daly, A.E. / Chang, A.B. / Purbey, P.K. / Williams, K.J. / Li, S. / Redelings, B.D. / Yeh, G. / Wu, Y. / Pope, S.D. / Venkatesh, B. / Li, S. / Nguyen, K. / Rodrigues, J. / Jorgensen, K. / Dasgupta, A. / Siggers, T. / Chen, L. / Smale, S.T. |
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History | Deposition | Sep 19, 2023 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Oct 2, 2024 | Provider: repository / Type: Initial release |
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Revision 1.1 | Apr 16, 2025 | Group: Database references / Structure summary / Category: citation / pdbx_entry_details Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.title / _citation.year |
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Revision 1.2 | May 14, 2025 | Group: Database references / Category: citation / citation_author Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title |
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