ソフトウェア | 名称 | バージョン | 分類 |
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PHENIX | (1.20.1_4487: ???)精密化 | xia2 | | データ削減 | DIALS | | データスケーリング | PHENIX | | 位相決定 | |
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精密化 | 構造決定の手法: 分子置換 / 解像度: 2.09→52.15 Å / SU ML: 0.5 / 交差検証法: FREE R-VALUE / σ(F): 1.33 / 位相誤差: 35.63 / 立体化学のターゲット値: ML
| Rfactor | 反射数 | %反射 |
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Rfree | 0.2899 | 1661 | 10 % |
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Rwork | 0.2205 | - | - |
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obs | 0.2275 | 16606 | 97.71 % |
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溶媒の処理 | 減衰半径: 0.9 Å / VDWプローブ半径: 1.1 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL |
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精密化ステップ | サイクル: LAST / 解像度: 2.09→52.15 Å
| タンパク質 | 核酸 | リガンド | 溶媒 | 全体 |
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原子数 | 2515 | 0 | 35 | 0 | 2550 |
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拘束条件 | Refine-ID | タイプ | Dev ideal | 数 |
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X-RAY DIFFRACTION | f_bond_d0.017 | 2608 | X-RAY DIFFRACTION | f_angle_d1.554 | 3547 | X-RAY DIFFRACTION | f_dihedral_angle_d7.905 | 353 | X-RAY DIFFRACTION | f_chiral_restr0.07 | 383 | X-RAY DIFFRACTION | f_plane_restr0.015 | 465 | | | | | |
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LS精密化 シェル | 解像度 (Å) | Rfactor Rfree | Num. reflection Rfree | Rfactor Rwork | Num. reflection Rwork | Refine-ID | % reflection obs (%) |
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2.09-2.16 | 0.4336 | 121 | 0.4249 | 1093 | X-RAY DIFFRACTION | 89 | 2.16-2.23 | 0.4187 | 130 | 0.3676 | 1169 | X-RAY DIFFRACTION | 93 | 2.23-2.3 | 0.3563 | 129 | 0.363 | 1152 | X-RAY DIFFRACTION | 93 | 2.3-2.4 | 0.3819 | 136 | 0.3175 | 1225 | X-RAY DIFFRACTION | 98 | 2.4-2.51 | 0.3624 | 141 | 0.2949 | 1279 | X-RAY DIFFRACTION | 100 | 2.51-2.64 | 0.299 | 138 | 0.2724 | 1239 | X-RAY DIFFRACTION | 100 | 2.64-2.8 | 0.3519 | 139 | 0.2613 | 1259 | X-RAY DIFFRACTION | 100 | 2.8-3.02 | 0.3192 | 141 | 0.2322 | 1271 | X-RAY DIFFRACTION | 100 | 3.02-3.32 | 0.2835 | 144 | 0.2182 | 1284 | X-RAY DIFFRACTION | 100 | 3.32-3.8 | 0.274 | 141 | 0.1934 | 1274 | X-RAY DIFFRACTION | 100 | 3.8-4.79 | 0.241 | 145 | 0.1861 | 1305 | X-RAY DIFFRACTION | 100 | 4.79-52.15 | 0.2768 | 156 | 0.1867 | 1395 | X-RAY DIFFRACTION | 100 |
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精密化 TLS | 手法: refined / Origin x: 19.4834 Å / Origin y: 22.8961 Å / Origin z: 9.8324 Å
| 11 | 12 | 13 | 21 | 22 | 23 | 31 | 32 | 33 |
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T | 0.3324 Å2 | 0.0036 Å2 | -0.0224 Å2 | - | 0.3257 Å2 | 0.0195 Å2 | - | - | 0.2805 Å2 |
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L | 1.8347 °2 | 0.3574 °2 | -0.4156 °2 | - | 0.944 °2 | -0.4167 °2 | - | - | 0.2916 °2 |
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S | -0.035 Å ° | 0.105 Å ° | -0.0555 Å ° | 0.0229 Å ° | 0.0298 Å ° | 0.1937 Å ° | -0.0235 Å ° | 0.0533 Å ° | -0 Å ° |
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精密化 TLSグループ | Selection details: all |
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