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Open data
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Basic information
Entry | Database: PDB / ID: 8r37 | ||||||
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Title | Klebsiella pneumoniae fosfomycin-resistance protein (FosAKP) | ||||||
![]() | FosA family fosfomycin resistance glutathione transferase | ||||||
![]() | TRANSFERASE / Antibiotic resistance / Klebsiella pneumoniae / Glutathione / Fosfomycin / metalloenzyme / biosensor | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Papageorgiou, A.C. / Varotsou, C. / Labrou, N.E. | ||||||
Funding support | 1items
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![]() | ![]() Title: Structural Studies of Klebsiella pneumoniae Fosfomycin-Resistance Protein and Its Application for the Development of an Optical Biosensor for Fosfomycin Determination. Authors: Varotsou, C. / Ataya, F. / Papageorgiou, A.C. / Labrou, N.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 97.4 KB | Display | ![]() |
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PDB format | ![]() | 58.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules BA
#1: Protein | Mass: 16495.578 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: The last eight C-terminal residues are flexible and not modelled. Source: (gene. exp.) ![]() ![]() ![]() |
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-Non-polymers , 6 types, 398 molecules ![](data/chem/img/FCN.gif)
![](data/chem/img/MN.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/K.gif)
![](data/chem/img/TLA.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/MN.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/K.gif)
![](data/chem/img/TLA.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-FCN / | ||||||||
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#3: Chemical | #4: Chemical | ChemComp-NA / #5: Chemical | #6: Chemical | ChemComp-TLA / | #7: Water | ChemComp-HOH / | |
-Details
Has ligand of interest | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.16 Å3/Da / Density % sol: 43.05 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop Details: PEG3350 18% w/v, potassium sodium tartrate 0.2 M, MnCl2 6 mM |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: May 29, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9919 Å / Relative weight: 1 |
Reflection | Resolution: 1.48→149.2 Å / Num. obs: 48410 / % possible obs: 99.4 % / Redundancy: 9.8 % / Biso Wilson estimate: 21.01 Å2 / CC1/2: 0.999 / Rrim(I) all: 0.089 / Net I/σ(I): 11.8 |
Reflection shell | Resolution: 1.48→1.51 Å / Mean I/σ(I) obs: 1.2 / Num. unique obs: 2174 / CC1/2: 0.666 / Rrim(I) all: 1.452 / % possible all: 92.2 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 27.59 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.48→44.85 Å
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Refine LS restraints |
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LS refinement shell |
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