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- PDB-8qur: Crystal structure of Ompk36 GD at 3500 eV with no absorption corr... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8qur | ||||||
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Title | Crystal structure of Ompk36 GD at 3500 eV with no absorption corrections | ||||||
![]() | OmpK36 | ||||||
![]() | MEMBRANE PROTEIN / long-wavelength x-ray diffraction | ||||||
Function / homology | ![]() porin activity / pore complex / monoatomic ion transmembrane transport / cell outer membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Duman, R. / Wagner, A. / Beis, K. / Wong, J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Ray-tracing analytical absorption correction for X-ray crystallography based on tomographic reconstructions. Authors: Lu, Y. / Duman, R. / Beilsten-Edmands, J. / Winter, G. / Basham, M. / Evans, G. / Kamps, J.J.A.G. / Orville, A.M. / Kwong, H.S. / Beis, K. / Armour, W. / Wagner, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 388.6 KB | Display | ![]() |
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PDB format | ![]() | 312.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 457.3 KB | Display | ![]() |
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Full document | ![]() | 464.9 KB | Display | |
Data in XML | ![]() | 37.7 KB | Display | |
Data in CIF | ![]() | 52.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8quqC ![]() 8quuC ![]() 8quvC ![]() 8qvbC ![]() 8qvsC ![]() 8qvvC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 38231.062 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-SO4 / #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.2 Å3/Da / Density % sol: 61.51 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 5.6 Details: 0.1M Lithium sulfate, 0.1M sodium citrate pH 5.6 and 12% PEG4000 |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 12M / Detector: PIXEL / Date: May 20, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 3.5424 Å / Relative weight: 1 |
Reflection | Resolution: 2.34→107.4 Å / Num. obs: 60652 / % possible obs: 98.77 % / Redundancy: 10.8 % / CC1/2: 0.996 / Net I/σ(I): 11.99 |
Reflection shell | Resolution: 2.34→2.42 Å / Num. unique obs: 5606 / CC1/2: 0.814 |
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Processing
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Refinement | Method to determine structure: ![]() Details: Hydrogens have been added in their riding positions
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 45.999 Å2
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Refinement step | Cycle: LAST / Resolution: 2.34→107.4 Å
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Refine LS restraints |
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LS refinement shell |
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