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- PDB-8qks: Plasmodium falciparum reticulocyte-binding protein homologue 5 (P... -

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Basic information

Entry
Database: PDB / ID: 8qks
TitlePlasmodium falciparum reticulocyte-binding protein homologue 5 (PfRH5) bound to R5.034
Components
  • Immunoglobulin lambda variable 1-36
  • R5034HV
  • Reticulocyte-binding protein-like protein 5
KeywordsIMMUNE SYSTEM / malaria RH5 Antibody Clonotype
Function / homologyRh5 coiled-coil domain / Rh5 coiled-coil domain / Reticulocyte-binding protein-like protein 5
Function and homology information
Biological speciesPlasmodium falciparum (malaria parasite P. falciparum)
Homo sapiens (human)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.994 Å
AuthorsWright, N.D. / Barrett, J.R. / Bradshaw, W.J. / Paterson, N.G. / MacLean, E.M. / Ferreira, L. / McHugh, K. / Von Delft, F. / Koekemoer, L. / Draper, S.J.
Funding support United Kingdom, 1items
OrganizationGrant numberCountry
University of Oxford, Medical Sciences Internal Fund (MSIF) United Kingdom
CitationJournal: To Be Published
Title: Analysis of the Diverse Antigenic Landscape of the Malaria Invasion Protein RH5 Identifies a Potent Vaccine-Induced Human Public Antibody Clonotype
Authors: Barrett, J.R. / Draper, S.J.
History
DepositionSep 16, 2023Deposition site: PDBE / Processing site: PDBE
Revision 1.0Jul 31, 2024Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Reticulocyte-binding protein-like protein 5
B: Immunoglobulin lambda variable 1-36
C: R5034HV
D: Reticulocyte-binding protein-like protein 5
E: Immunoglobulin lambda variable 1-36
F: R5034HV
G: Reticulocyte-binding protein-like protein 5
H: Reticulocyte-binding protein-like protein 5
I: Immunoglobulin lambda variable 1-36
J: R5034HV
K: Immunoglobulin lambda variable 1-36
L: R5034HV
M: Reticulocyte-binding protein-like protein 5
N: Reticulocyte-binding protein-like protein 5
O: Immunoglobulin lambda variable 1-36
P: R5034HV
Q: Immunoglobulin lambda variable 1-36
R: R5034HV
S: Reticulocyte-binding protein-like protein 5
T: Reticulocyte-binding protein-like protein 5
U: Immunoglobulin lambda variable 1-36
V: R5034HV
W: Immunoglobulin lambda variable 1-36
X: R5034HV


Theoretical massNumber of molelcules
Total (without water)495,23324
Polymers495,23324
Non-polymers00
Water00
1
A: Reticulocyte-binding protein-like protein 5
B: Immunoglobulin lambda variable 1-36
C: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
D: Reticulocyte-binding protein-like protein 5
E: Immunoglobulin lambda variable 1-36
F: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
3
G: Reticulocyte-binding protein-like protein 5
K: Immunoglobulin lambda variable 1-36
L: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
4
H: Reticulocyte-binding protein-like protein 5
I: Immunoglobulin lambda variable 1-36
J: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
5
M: Reticulocyte-binding protein-like protein 5
Q: Immunoglobulin lambda variable 1-36
R: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
6
N: Reticulocyte-binding protein-like protein 5
O: Immunoglobulin lambda variable 1-36
P: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
7
S: Reticulocyte-binding protein-like protein 5
W: Immunoglobulin lambda variable 1-36
X: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
8
T: Reticulocyte-binding protein-like protein 5
U: Immunoglobulin lambda variable 1-36
V: R5034HV


Theoretical massNumber of molelcules
Total (without water)61,9043
Polymers61,9043
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)82.259, 376.787, 226.818
Angle α, β, γ (deg.)90, 90.062, 90
Int Tables number3
Space group name H-MP121
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21A
32A
42A
53A
63A
74A
84A
95A
105A
116A
126A
137A
147A
158A
168A
179A
189A
1910A
2010A
2111A
2211A
2312A
2412A
2513A
2613A
2714A
2814A
2915A
3015A
3116A
3216A
3317A
3417A
3518A
3618A
3719A
3819A
3920A
4020A
4121A
4221A
4322A
4422A
4523A
4623A
4724A
4824A
4925A
5025A
5126A
5226A
5327A
5427A
5528A
5628A
5729A
5829A
5930A
6030A
6131A
6231A
6332A
6432A
6533A
6633A
6734A
6834A
6935A
7035A
7136A
7236A
7337A
7437A
7538A
7638A
7739A
7839A
7940A
8040A
8141A
8241A
8342A
8442A
8543A
8643A
8744A
8844A
8945A
9045A
9146A
9246A
9347A
9447A
9548A
9648A
9749A
9849A
9950A
10050A
10151A
10251A
10352A
10452A
10553A
10653A
10754A
10854A
10955A
11055A
11156A
11256A
11357A
11457A
11558A
11658A
11759A
11859A
11960A
12060A
12161A
12261A
12362A
12462A
12563A
12663A
12764A
12864A
12965A
13065A
13166A
13266A
13367A
13467A
13568A
13668A
13769A
13869A
13970A
14070A
14171A
14271A
14372A
14472A
14573A
14673A
14774A
14874A
14975A
15075A
15176A
15276A
15377A
15477A
15578A
15678A
15779A
15879A
15980A
16080A
16181A
16281A
16382A
16482A
16583A
16683A
16784A
16884A

NCS domain segments:
Dom-IDComponent-IDEns-IDAuth asym-IDAuth seq-ID
111A7 - 305
211A7 - 305
322A7 - 310
422A7 - 310
533A7 - 305
633A7 - 305
744A7 - 311
844A7 - 311
955A7 - 305
1055A7 - 305
1166A20 - 311
1266A20 - 311
1377A7 - 305
1477A7 - 305
1588A7 - 101
1688A7 - 101
1799A7 - 101
1899A7 - 101
191010A7 - 101
201010A7 - 101
211111A7 - 102
221111A7 - 102
231212A7 - 102
241212A7 - 102
251313A7 - 102
261313A7 - 102
271414A7 - 101
281414A7 - 101
291515A1 - 120
301515A1 - 120
311616A1 - 120
321616A1 - 120
331717A1 - 120
341717A1 - 120
351818A1 - 120
361818A1 - 120
371919A1 - 120
381919A1 - 120
392020A1 - 120
402020A1 - 120
412121A1 - 120
422121A1 - 120
432222A7 - 305
442222A7 - 305
452323A7 - 305
462323A7 - 305
472424A7 - 305
482424A7 - 305
492525A7 - 305
502525A7 - 305
512626A20 - 305
522626A20 - 305
532727A7 - 305
542727A7 - 305
552828A7 - 103
562828A7 - 103
572929A7 - 103
582929A7 - 103
593030A7 - 103
603030A7 - 103
613131A7 - 102
623131A7 - 102
633232A7 - 103
643232A7 - 103
653333A7 - 103
663333A7 - 103
673434A1 - 120
683434A1 - 120
693535A1 - 120
703535A1 - 120
713636A1 - 120
723636A1 - 120
733737A1 - 120
743737A1 - 120
753838A1 - 120
763838A1 - 120
773939A1 - 120
783939A1 - 120
794040A7 - 304
804040A7 - 304
814141A7 - 311
824141A7 - 311
834242A7 - 305
844242A7 - 305
854343A20 - 310
864343A20 - 310
874444A7 - 305
884444A7 - 305
894545A7 - 305
904545A7 - 305
914646A7 - 305
924646A7 - 305
934747A20 - 304
944747A20 - 304
954848A7 - 305
964848A7 - 305
974949A7 - 103
984949A7 - 103
995050A7 - 103
1005050A7 - 103
1015151A7 - 102
1025151A7 - 102
1035252A7 - 103
1045252A7 - 103
1055353A7 - 103
1065353A7 - 103
1075454A1 - 120
1085454A1 - 120
1095555A1 - 120
1105555A1 - 120
1115656A1 - 120
1125656A1 - 120
1135757A1 - 120
1145757A1 - 120
1155858A1 - 120
1165858A1 - 120
1175959A7 - 103
1185959A7 - 103
1196060A7 - 102
1206060A7 - 102
1216161A7 - 103
1226161A7 - 103
1236262A7 - 103
1246262A7 - 103
1256363A1 - 120
1266363A1 - 120
1276464A1 - 120
1286464A1 - 120
1296565A1 - 120
1306565A1 - 120
1316666A1 - 120
1326666A1 - 120
1336767A7 - 305
1346767A7 - 305
1356868A20 - 311
1366868A20 - 311
1376969A7 - 305
1386969A7 - 305
1397070A20 - 304
1407070A20 - 304
1417171A7 - 305
1427171A7 - 305
1437272A7 - 103
1447272A7 - 103
1457373A7 - 103
1467373A7 - 103
1477474A7 - 103
1487474A7 - 103
1497575A1 - 120
1507575A1 - 120
1517676A1 - 120
1527676A1 - 120
1537777A1 - 120
1547777A1 - 120
1557878A7 - 102
1567878A7 - 102
1577979A7 - 102
1587979A7 - 102
1598080A1 - 120
1608080A1 - 120
1618181A1 - 120
1628181A1 - 120
1638282A20 - 305
1648282A20 - 305
1658383A7 - 103
1668383A7 - 103
1678484A1 - 120
1688484A1 - 120

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112
57Local NCS retraints between domains: 113 114
58Local NCS retraints between domains: 115 116
59Local NCS retraints between domains: 117 118
60Local NCS retraints between domains: 119 120
61Local NCS retraints between domains: 121 122
62Local NCS retraints between domains: 123 124
63Local NCS retraints between domains: 125 126
64Local NCS retraints between domains: 127 128
65Local NCS retraints between domains: 129 130
66Local NCS retraints between domains: 131 132
67Local NCS retraints between domains: 133 134
68Local NCS retraints between domains: 135 136
69Local NCS retraints between domains: 137 138
70Local NCS retraints between domains: 139 140
71Local NCS retraints between domains: 141 142
72Local NCS retraints between domains: 143 144
73Local NCS retraints between domains: 145 146
74Local NCS retraints between domains: 147 148
75Local NCS retraints between domains: 149 150
76Local NCS retraints between domains: 151 152
77Local NCS retraints between domains: 153 154
78Local NCS retraints between domains: 155 156
79Local NCS retraints between domains: 157 158
80Local NCS retraints between domains: 159 160
81Local NCS retraints between domains: 161 162
82Local NCS retraints between domains: 163 164
83Local NCS retraints between domains: 165 166
84Local NCS retraints between domains: 167 168

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Components

#1: Protein
Reticulocyte-binding protein-like protein 5


Mass: 37239.992 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Plasmodium falciparum (malaria parasite P. falciparum)
Gene: Rh5 / Production host: Homo sapiens (human) / References: UniProt: A0A8F2YHP6
#2: Protein
Immunoglobulin lambda variable 1-36


Mass: 11078.051 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: IGLV1-36 / Production host: Homo sapiens (human)
#3: Antibody
R5034HV


Mass: 13586.096 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Production host: Homo sapiens (human)

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 5.04 Å3/Da / Density % sol: 75.59 %
Crystal growTemperature: 298 K / Method: vapor diffusion, sitting drop
Details: 0.02 M Calcium chloride dihydrate 0.02 M Cadmium chloride hydrate 0.02 M Cobalt(II) chloride hexahydrate 20% w/v Polyethylene glycol 3,350

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: Diamond / Beamline: I24 / Wavelength: 0.9999 Å
DetectorType: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jul 6, 2023
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9999 Å / Relative weight: 1
ReflectionResolution: 3.99→65.604 Å / Num. obs: 115243 / % possible obs: 99 % / Redundancy: 6.8 % / CC1/2: 0.993 / Net I/σ(I): 0.319
Reflection shellResolution: 3.99→4.06 Å / Num. unique obs: 5241 / CC1/2: 0.22

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Processing

Software
NameVersionClassification
REFMAC5.8.0425refinement
xia2data reduction
xia2data scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.994→65.604 Å / Cor.coef. Fo:Fc: 0.628 / Cor.coef. Fo:Fc free: 0.672 / SU B: 154.907 / SU ML: 2.266 / Cross valid method: THROUGHOUT / ESU R Free: 0.986 / Details: Hydrogens have not been used
RfactorNum. reflection% reflectionSelection details
Rfree0.4581 1918 1.665 %RANDOM
Rwork0.4413 113258 --
all0.442 ---
obs-115176 98.869 %-
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 166.39 Å2
Baniso -1Baniso -2Baniso -3
1--0.609 Å2-0 Å24.384 Å2
2--2.822 Å20 Å2
3----2.222 Å2
Refinement stepCycle: LAST / Resolution: 3.994→65.604 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms32276 0 0 0 32276
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0050.01232934
X-RAY DIFFRACTIONr_angle_refined_deg1.7111.81844316
X-RAY DIFFRACTIONr_dihedral_angle_1_deg8.47453955
X-RAY DIFFRACTIONr_dihedral_angle_2_deg8.65131
X-RAY DIFFRACTIONr_dihedral_angle_3_deg17.905106052
X-RAY DIFFRACTIONr_dihedral_angle_6_deg12.355101593
X-RAY DIFFRACTIONr_chiral_restr0.1340.24775
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.0224741
X-RAY DIFFRACTIONr_nbd_refined0.2180.214600
X-RAY DIFFRACTIONr_nbtor_refined0.2940.222226
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.160.2996
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.4250.22137
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_refined0.3740.2143
X-RAY DIFFRACTIONr_mcbond_it8.75416.77715949
X-RAY DIFFRACTIONr_mcangle_it15.72430.18319861
X-RAY DIFFRACTIONr_scbond_it6.86816.48516985
X-RAY DIFFRACTIONr_scangle_it13.04430.65624455
X-RAY DIFFRACTIONr_lrange_it37.565208.19950124
X-RAY DIFFRACTIONr_ncsr_local_group_10.1550.058295
X-RAY DIFFRACTIONr_ncsr_local_group_20.1590.058979
X-RAY DIFFRACTIONr_ncsr_local_group_30.1510.057945
X-RAY DIFFRACTIONr_ncsr_local_group_40.1420.059057
X-RAY DIFFRACTIONr_ncsr_local_group_50.1660.058442
X-RAY DIFFRACTIONr_ncsr_local_group_60.1560.058907
X-RAY DIFFRACTIONr_ncsr_local_group_70.1650.058101
X-RAY DIFFRACTIONr_ncsr_local_group_80.1060.052501
X-RAY DIFFRACTIONr_ncsr_local_group_90.1160.052509
X-RAY DIFFRACTIONr_ncsr_local_group_100.1210.052427
X-RAY DIFFRACTIONr_ncsr_local_group_110.1470.052346
X-RAY DIFFRACTIONr_ncsr_local_group_120.1170.052348
X-RAY DIFFRACTIONr_ncsr_local_group_130.1560.052178
X-RAY DIFFRACTIONr_ncsr_local_group_140.1530.052255
X-RAY DIFFRACTIONr_ncsr_local_group_150.0980.053415
X-RAY DIFFRACTIONr_ncsr_local_group_160.0860.053424
X-RAY DIFFRACTIONr_ncsr_local_group_170.1240.053319
X-RAY DIFFRACTIONr_ncsr_local_group_180.1170.053315
X-RAY DIFFRACTIONr_ncsr_local_group_190.1080.053393
X-RAY DIFFRACTIONr_ncsr_local_group_200.1110.053319
X-RAY DIFFRACTIONr_ncsr_local_group_210.1390.053228
X-RAY DIFFRACTIONr_ncsr_local_group_220.1430.058617
X-RAY DIFFRACTIONr_ncsr_local_group_230.1330.058285
X-RAY DIFFRACTIONr_ncsr_local_group_240.1320.058503
X-RAY DIFFRACTIONr_ncsr_local_group_250.130.058778
X-RAY DIFFRACTIONr_ncsr_local_group_260.1190.058634
X-RAY DIFFRACTIONr_ncsr_local_group_270.1350.058499
X-RAY DIFFRACTIONr_ncsr_local_group_280.0930.052567
X-RAY DIFFRACTIONr_ncsr_local_group_290.1140.052489
X-RAY DIFFRACTIONr_ncsr_local_group_300.1340.052385
X-RAY DIFFRACTIONr_ncsr_local_group_310.1090.052361
X-RAY DIFFRACTIONr_ncsr_local_group_320.1440.052207
X-RAY DIFFRACTIONr_ncsr_local_group_330.1450.052311
X-RAY DIFFRACTIONr_ncsr_local_group_340.0960.053391
X-RAY DIFFRACTIONr_ncsr_local_group_350.1390.053275
X-RAY DIFFRACTIONr_ncsr_local_group_360.1280.053255
X-RAY DIFFRACTIONr_ncsr_local_group_370.1220.053326
X-RAY DIFFRACTIONr_ncsr_local_group_380.120.053278
X-RAY DIFFRACTIONr_ncsr_local_group_390.1360.053213
X-RAY DIFFRACTIONr_ncsr_local_group_400.1450.058200
X-RAY DIFFRACTIONr_ncsr_local_group_410.1330.059209
X-RAY DIFFRACTIONr_ncsr_local_group_420.1560.058833
X-RAY DIFFRACTIONr_ncsr_local_group_430.1320.059356
X-RAY DIFFRACTIONr_ncsr_local_group_440.1460.058519
X-RAY DIFFRACTIONr_ncsr_local_group_450.1260.058211
X-RAY DIFFRACTIONr_ncsr_local_group_460.1360.058251
X-RAY DIFFRACTIONr_ncsr_local_group_470.1230.058137
X-RAY DIFFRACTIONr_ncsr_local_group_480.1320.058230
X-RAY DIFFRACTIONr_ncsr_local_group_490.1150.052486
X-RAY DIFFRACTIONr_ncsr_local_group_500.1430.052386
X-RAY DIFFRACTIONr_ncsr_local_group_510.1280.052320
X-RAY DIFFRACTIONr_ncsr_local_group_520.1540.052194
X-RAY DIFFRACTIONr_ncsr_local_group_530.1530.052329
X-RAY DIFFRACTIONr_ncsr_local_group_540.1350.053262
X-RAY DIFFRACTIONr_ncsr_local_group_550.120.053293
X-RAY DIFFRACTIONr_ncsr_local_group_560.1110.053327
X-RAY DIFFRACTIONr_ncsr_local_group_570.0980.053357
X-RAY DIFFRACTIONr_ncsr_local_group_580.1420.053198
X-RAY DIFFRACTIONr_ncsr_local_group_590.1520.052303
X-RAY DIFFRACTIONr_ncsr_local_group_600.1140.052325
X-RAY DIFFRACTIONr_ncsr_local_group_610.1520.052187
X-RAY DIFFRACTIONr_ncsr_local_group_620.1480.052312
X-RAY DIFFRACTIONr_ncsr_local_group_630.150.053202
X-RAY DIFFRACTIONr_ncsr_local_group_640.1440.053288
X-RAY DIFFRACTIONr_ncsr_local_group_650.1420.053219
X-RAY DIFFRACTIONr_ncsr_local_group_660.1480.053214
X-RAY DIFFRACTIONr_ncsr_local_group_670.1390.058594
X-RAY DIFFRACTIONr_ncsr_local_group_680.1220.059144
X-RAY DIFFRACTIONr_ncsr_local_group_690.1420.058341
X-RAY DIFFRACTIONr_ncsr_local_group_700.1390.058789
X-RAY DIFFRACTIONr_ncsr_local_group_710.140.058505
X-RAY DIFFRACTIONr_ncsr_local_group_720.1590.052190
X-RAY DIFFRACTIONr_ncsr_local_group_730.1570.052129
X-RAY DIFFRACTIONr_ncsr_local_group_740.1780.052184
X-RAY DIFFRACTIONr_ncsr_local_group_750.1270.053264
X-RAY DIFFRACTIONr_ncsr_local_group_760.1320.053232
X-RAY DIFFRACTIONr_ncsr_local_group_770.1610.053103
X-RAY DIFFRACTIONr_ncsr_local_group_780.1480.052063
X-RAY DIFFRACTIONr_ncsr_local_group_790.1620.052140
X-RAY DIFFRACTIONr_ncsr_local_group_800.110.053290
X-RAY DIFFRACTIONr_ncsr_local_group_810.1510.053189
X-RAY DIFFRACTIONr_ncsr_local_group_820.1310.058387
X-RAY DIFFRACTIONr_ncsr_local_group_830.1870.052058
X-RAY DIFFRACTIONr_ncsr_local_group_840.1420.053167
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AX-RAY DIFFRACTIONLocal ncs0.154970.05009
12AX-RAY DIFFRACTIONLocal ncs0.154970.05009
23AX-RAY DIFFRACTIONLocal ncs0.159470.05008
24AX-RAY DIFFRACTIONLocal ncs0.159470.05008
35AX-RAY DIFFRACTIONLocal ncs0.151130.05009
36AX-RAY DIFFRACTIONLocal ncs0.151130.05009
47AX-RAY DIFFRACTIONLocal ncs0.142180.05009
48AX-RAY DIFFRACTIONLocal ncs0.142180.05009
59AX-RAY DIFFRACTIONLocal ncs0.165660.05008
510AX-RAY DIFFRACTIONLocal ncs0.165660.05008
611AX-RAY DIFFRACTIONLocal ncs0.155910.05009
612AX-RAY DIFFRACTIONLocal ncs0.155910.05009
713AX-RAY DIFFRACTIONLocal ncs0.165020.05008
714AX-RAY DIFFRACTIONLocal ncs0.165020.05008
815AX-RAY DIFFRACTIONLocal ncs0.105580.0501
816AX-RAY DIFFRACTIONLocal ncs0.105580.0501
917AX-RAY DIFFRACTIONLocal ncs0.116270.0501
918AX-RAY DIFFRACTIONLocal ncs0.116270.0501
1019AX-RAY DIFFRACTIONLocal ncs0.121280.05009
1020AX-RAY DIFFRACTIONLocal ncs0.121280.05009
1121AX-RAY DIFFRACTIONLocal ncs0.146780.05009
1122AX-RAY DIFFRACTIONLocal ncs0.146780.05009
1223AX-RAY DIFFRACTIONLocal ncs0.116790.0501
1224AX-RAY DIFFRACTIONLocal ncs0.116790.0501
1325AX-RAY DIFFRACTIONLocal ncs0.156270.05008
1326AX-RAY DIFFRACTIONLocal ncs0.156270.05008
1427AX-RAY DIFFRACTIONLocal ncs0.15260.05007
1428AX-RAY DIFFRACTIONLocal ncs0.15260.05007
1529AX-RAY DIFFRACTIONLocal ncs0.098090.0501
1530AX-RAY DIFFRACTIONLocal ncs0.098090.0501
1631AX-RAY DIFFRACTIONLocal ncs0.086080.05011
1632AX-RAY DIFFRACTIONLocal ncs0.086080.05011
1733AX-RAY DIFFRACTIONLocal ncs0.124420.05009
1734AX-RAY DIFFRACTIONLocal ncs0.124420.05009
1835AX-RAY DIFFRACTIONLocal ncs0.116760.0501
1836AX-RAY DIFFRACTIONLocal ncs0.116760.0501
1937AX-RAY DIFFRACTIONLocal ncs0.107960.0501
1938AX-RAY DIFFRACTIONLocal ncs0.107960.0501
2039AX-RAY DIFFRACTIONLocal ncs0.110660.0501
2040AX-RAY DIFFRACTIONLocal ncs0.110660.0501
2141AX-RAY DIFFRACTIONLocal ncs0.138680.0501
2142AX-RAY DIFFRACTIONLocal ncs0.138680.0501
2243AX-RAY DIFFRACTIONLocal ncs0.142520.05009
2244AX-RAY DIFFRACTIONLocal ncs0.142520.05009
2345AX-RAY DIFFRACTIONLocal ncs0.13280.05009
2346AX-RAY DIFFRACTIONLocal ncs0.13280.05009
2447AX-RAY DIFFRACTIONLocal ncs0.132010.05009
2448AX-RAY DIFFRACTIONLocal ncs0.132010.05009
2549AX-RAY DIFFRACTIONLocal ncs0.130010.05009
2550AX-RAY DIFFRACTIONLocal ncs0.130010.05009
2651AX-RAY DIFFRACTIONLocal ncs0.118840.05009
2652AX-RAY DIFFRACTIONLocal ncs0.118840.05009
2753AX-RAY DIFFRACTIONLocal ncs0.135250.05009
2754AX-RAY DIFFRACTIONLocal ncs0.135250.05009
2855AX-RAY DIFFRACTIONLocal ncs0.092590.0501
2856AX-RAY DIFFRACTIONLocal ncs0.092590.0501
2957AX-RAY DIFFRACTIONLocal ncs0.114250.05009
2958AX-RAY DIFFRACTIONLocal ncs0.114250.05009
3059AX-RAY DIFFRACTIONLocal ncs0.133680.05009
3060AX-RAY DIFFRACTIONLocal ncs0.133680.05009
3161AX-RAY DIFFRACTIONLocal ncs0.108590.0501
3162AX-RAY DIFFRACTIONLocal ncs0.108590.0501
3263AX-RAY DIFFRACTIONLocal ncs0.143740.05009
3264AX-RAY DIFFRACTIONLocal ncs0.143740.05009
3365AX-RAY DIFFRACTIONLocal ncs0.144740.05008
3366AX-RAY DIFFRACTIONLocal ncs0.144740.05008
3467AX-RAY DIFFRACTIONLocal ncs0.096490.05011
3468AX-RAY DIFFRACTIONLocal ncs0.096490.05011
3569AX-RAY DIFFRACTIONLocal ncs0.138750.05009
3570AX-RAY DIFFRACTIONLocal ncs0.138750.05009
3671AX-RAY DIFFRACTIONLocal ncs0.12790.0501
3672AX-RAY DIFFRACTIONLocal ncs0.12790.0501
3773AX-RAY DIFFRACTIONLocal ncs0.122220.0501
3774AX-RAY DIFFRACTIONLocal ncs0.122220.0501
3875AX-RAY DIFFRACTIONLocal ncs0.11980.0501
3876AX-RAY DIFFRACTIONLocal ncs0.11980.0501
3977AX-RAY DIFFRACTIONLocal ncs0.13610.05009
3978AX-RAY DIFFRACTIONLocal ncs0.13610.05009
4079AX-RAY DIFFRACTIONLocal ncs0.145150.05009
4080AX-RAY DIFFRACTIONLocal ncs0.145150.05009
4181AX-RAY DIFFRACTIONLocal ncs0.133110.05009
4182AX-RAY DIFFRACTIONLocal ncs0.133110.05009
4283AX-RAY DIFFRACTIONLocal ncs0.155650.05009
4284AX-RAY DIFFRACTIONLocal ncs0.155650.05009
4385AX-RAY DIFFRACTIONLocal ncs0.132150.05009
4386AX-RAY DIFFRACTIONLocal ncs0.132150.05009
4487AX-RAY DIFFRACTIONLocal ncs0.146380.05009
4488AX-RAY DIFFRACTIONLocal ncs0.146380.05009
4589AX-RAY DIFFRACTIONLocal ncs0.126070.05009
4590AX-RAY DIFFRACTIONLocal ncs0.126070.05009
4691AX-RAY DIFFRACTIONLocal ncs0.135840.05009
4692AX-RAY DIFFRACTIONLocal ncs0.135840.05009
4793AX-RAY DIFFRACTIONLocal ncs0.123020.05009
4794AX-RAY DIFFRACTIONLocal ncs0.123020.05009
4895AX-RAY DIFFRACTIONLocal ncs0.132350.05009
4896AX-RAY DIFFRACTIONLocal ncs0.132350.05009
4997AX-RAY DIFFRACTIONLocal ncs0.115240.05009
4998AX-RAY DIFFRACTIONLocal ncs0.115240.05009
5099AX-RAY DIFFRACTIONLocal ncs0.142660.05009
50100AX-RAY DIFFRACTIONLocal ncs0.142660.05009
51101AX-RAY DIFFRACTIONLocal ncs0.127980.05009
51102AX-RAY DIFFRACTIONLocal ncs0.127980.05009
52103AX-RAY DIFFRACTIONLocal ncs0.154080.05008
52104AX-RAY DIFFRACTIONLocal ncs0.154080.05008
53105AX-RAY DIFFRACTIONLocal ncs0.152820.05008
53106AX-RAY DIFFRACTIONLocal ncs0.152820.05008
54107AX-RAY DIFFRACTIONLocal ncs0.135040.05009
54108AX-RAY DIFFRACTIONLocal ncs0.135040.05009
55109AX-RAY DIFFRACTIONLocal ncs0.120380.0501
55110AX-RAY DIFFRACTIONLocal ncs0.120380.0501
56111AX-RAY DIFFRACTIONLocal ncs0.1110.0501
56112AX-RAY DIFFRACTIONLocal ncs0.1110.0501
57113AX-RAY DIFFRACTIONLocal ncs0.097820.05011
57114AX-RAY DIFFRACTIONLocal ncs0.097820.05011
58115AX-RAY DIFFRACTIONLocal ncs0.141760.0501
58116AX-RAY DIFFRACTIONLocal ncs0.141760.0501
59117AX-RAY DIFFRACTIONLocal ncs0.152340.05008
59118AX-RAY DIFFRACTIONLocal ncs0.152340.05008
60119AX-RAY DIFFRACTIONLocal ncs0.114490.05009
60120AX-RAY DIFFRACTIONLocal ncs0.114490.05009
61121AX-RAY DIFFRACTIONLocal ncs0.151770.05008
61122AX-RAY DIFFRACTIONLocal ncs0.151770.05008
62123AX-RAY DIFFRACTIONLocal ncs0.147670.05007
62124AX-RAY DIFFRACTIONLocal ncs0.147670.05007
63125AX-RAY DIFFRACTIONLocal ncs0.149940.05009
63126AX-RAY DIFFRACTIONLocal ncs0.149940.05009
64127AX-RAY DIFFRACTIONLocal ncs0.144220.05009
64128AX-RAY DIFFRACTIONLocal ncs0.144220.05009
65129AX-RAY DIFFRACTIONLocal ncs0.141550.05009
65130AX-RAY DIFFRACTIONLocal ncs0.141550.05009
66131AX-RAY DIFFRACTIONLocal ncs0.147770.05009
66132AX-RAY DIFFRACTIONLocal ncs0.147770.05009
67133AX-RAY DIFFRACTIONLocal ncs0.139070.05009
67134AX-RAY DIFFRACTIONLocal ncs0.139070.05009
68135AX-RAY DIFFRACTIONLocal ncs0.122250.05009
68136AX-RAY DIFFRACTIONLocal ncs0.122250.05009
69137AX-RAY DIFFRACTIONLocal ncs0.141950.05009
69138AX-RAY DIFFRACTIONLocal ncs0.141950.05009
70139AX-RAY DIFFRACTIONLocal ncs0.139050.05009
70140AX-RAY DIFFRACTIONLocal ncs0.139050.05009
71141AX-RAY DIFFRACTIONLocal ncs0.139890.05009
71142AX-RAY DIFFRACTIONLocal ncs0.139890.05009
72143AX-RAY DIFFRACTIONLocal ncs0.159180.05009
72144AX-RAY DIFFRACTIONLocal ncs0.159180.05009
73145AX-RAY DIFFRACTIONLocal ncs0.157410.05008
73146AX-RAY DIFFRACTIONLocal ncs0.157410.05008
74147AX-RAY DIFFRACTIONLocal ncs0.177990.05007
74148AX-RAY DIFFRACTIONLocal ncs0.177990.05007
75149AX-RAY DIFFRACTIONLocal ncs0.127160.0501
75150AX-RAY DIFFRACTIONLocal ncs0.127160.0501
76151AX-RAY DIFFRACTIONLocal ncs0.132150.0501
76152AX-RAY DIFFRACTIONLocal ncs0.132150.0501
77153AX-RAY DIFFRACTIONLocal ncs0.160850.05009
77154AX-RAY DIFFRACTIONLocal ncs0.160850.05009
78155AX-RAY DIFFRACTIONLocal ncs0.147710.05008
78156AX-RAY DIFFRACTIONLocal ncs0.147710.05008
79157AX-RAY DIFFRACTIONLocal ncs0.162090.05007
79158AX-RAY DIFFRACTIONLocal ncs0.162090.05007
80159AX-RAY DIFFRACTIONLocal ncs0.10980.0501
80160AX-RAY DIFFRACTIONLocal ncs0.10980.0501
81161AX-RAY DIFFRACTIONLocal ncs0.150840.05009
81162AX-RAY DIFFRACTIONLocal ncs0.150840.05009
82163AX-RAY DIFFRACTIONLocal ncs0.130550.05009
82164AX-RAY DIFFRACTIONLocal ncs0.130550.05009
83165AX-RAY DIFFRACTIONLocal ncs0.186780.05007
83166AX-RAY DIFFRACTIONLocal ncs0.186780.05007
84167AX-RAY DIFFRACTIONLocal ncs0.142290.0501
84168AX-RAY DIFFRACTIONLocal ncs0.142290.0501
LS refinement shell

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20

Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRfactor allNum. reflection allFsc freeFsc work% reflection obs (%)WRfactor Rwork
3.994-4.0980.4121470.37378970.37486490.8810.89693.0050.372
4.098-4.210.411410.37780270.37882480.7780.82399.03010.377
4.21-4.3310.41020.35680410.35782110.8660.87499.17180.357
4.331-4.4640.371300.35176560.35178660.8990.90898.9830.353
4.464-4.610.4241070.36974940.3776560.8610.89899.28160.37
4.61-4.7710.3851240.38171740.38173530.8880.88299.2520.382
4.771-4.950.3851190.39569820.39571440.8780.88199.39810.392
4.95-5.150.391260.40467640.40469380.8720.87499.30820.404
5.15-5.3780.4051100.40663850.40665440.8560.87499.25120.405
5.378-5.6390.452920.40661610.40762860.8450.87799.4750.404
5.639-5.9410.502790.42659440.42760580.8280.86199.42220.428
5.941-6.2980.428940.43855700.43756920.8130.85399.50810.438
6.298-6.7290.444980.43852020.43853220.8030.82999.58660.444
6.729-7.2620.488750.44548780.44549820.7990.84399.41790.451
7.262-7.9450.5571010.47544700.47745840.7690.82499.71640.489
7.945-8.8660.493580.48141160.48141900.8450.84299.61810.47
8.866-10.2070.566680.48436290.48637060.7520.83799.75720.465
10.207-12.4260.432590.47630480.47531140.8740.85699.77520.453
12.426-17.2660.554600.52924000.52924660.80.81799.75670.499
17.266-65.6040.483280.66914200.66514520.8720.68699.72450.637

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