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Yorodumi- PDB-8qhh: NMR solution structure of the green kiwi fruit allergen Act d 8.0101 -
+Open data
-Basic information
Entry | Database: PDB / ID: 8qhh | |||||||||
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Title | NMR solution structure of the green kiwi fruit allergen Act d 8.0101 | |||||||||
Components | Bet v 1 related allergen | |||||||||
Keywords | ALLERGEN / PR-10 allergen | |||||||||
Function / homology | Function and homology information abscisic acid binding / abscisic acid-activated signaling pathway / protein phosphatase inhibitor activity / defense response / signaling receptor activity Similarity search - Function | |||||||||
Biological species | Actinidia deliciosa (Chinese gooseberry) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Zeindl, R. / Tollinger, M. | |||||||||
Funding support | Austria, 2items
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Citation | Journal: Biomol NMR Assign / Year: 2021 Title: NMR resonance assignments of the PR-10 allergens Act c 8 and Act d 8 from golden and green kiwifruit. Authors: Zeindl, R. / Tollinger, M. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8qhh.cif.gz | 895.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8qhh.ent.gz | 763.9 KB | Display | PDB format |
PDBx/mmJSON format | 8qhh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8qhh_validation.pdf.gz | 459.5 KB | Display | wwPDB validaton report |
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Full document | 8qhh_full_validation.pdf.gz | 559.5 KB | Display | |
Data in XML | 8qhh_validation.xml.gz | 59.4 KB | Display | |
Data in CIF | 8qhh_validation.cif.gz | 79.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qh/8qhh ftp://data.pdbj.org/pub/pdb/validation_reports/qh/8qhh | HTTPS FTP |
-Related structure data
Related structure data | 8qhiC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 16812.113 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Actinidia deliciosa (Chinese gooseberry) Gene: ypr-10 / Production host: Escherichia coli (E. coli) / References: UniProt: D1YSM5 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 0 Not defined / Label: conditions_1 / pH: 6.9 / Pressure: 1 bar / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Agilent Direct Drive / Manufacturer: Agilent / Model: Direct Drive / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 40 / Conformers submitted total number: 20 |