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Yorodumi- PDB-8onw: Crystal structure of the hetero-dimeric complex from Archaeoglobu... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8onw | ||||||
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Title | Crystal structure of the hetero-dimeric complex from Archaeoglobus fulgidus PRC1 and PRC2 domains | ||||||
Components | (PRC-barrel domain-containing protein) x 3 | ||||||
Keywords | CELL CYCLE / ftsz / cell division / divisome / archeae | ||||||
Function / homology | PRC-barrel domain / PRC-barrel domain / PRC-barrel-like superfamily / PRC-barrel domain-containing protein / PRC-barrel domain-containing protein Function and homology information | ||||||
Biological species | Archaeoglobus fulgidus (archaea) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.29 Å | ||||||
Authors | Ciziene, D. / Bellini, D. / Lowe, J.Y. | ||||||
Funding support | United Kingdom, 1items
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Citation | Journal: To Be Published Title: Crystal structure of the hetero-dimeric complex from Archaeoglobus fulgidus PRC1 and PRC2 domains Authors: Ciziene, D. / Bellini, D. / Lowe, J.Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8onw.cif.gz | 135.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8onw.ent.gz | 106.4 KB | Display | PDB format |
PDBx/mmJSON format | 8onw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8onw_validation.pdf.gz | 484.3 KB | Display | wwPDB validaton report |
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Full document | 8onw_full_validation.pdf.gz | 496.3 KB | Display | |
Data in XML | 8onw_validation.xml.gz | 23.7 KB | Display | |
Data in CIF | 8onw_validation.cif.gz | 31.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/on/8onw ftp://data.pdbj.org/pub/pdb/validation_reports/on/8onw | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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4 |
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Unit cell |
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-Components
#1: Protein | Mass: 10536.238 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Archaeoglobus fulgidus (archaea) / Gene: XD40_0572 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: A0A117KMF0 #2: Protein | Mass: 8643.102 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Archaeoglobus fulgidus (archaea) / Gene: XD40_0428 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: A0A117KMK3 #3: Protein | Mass: 8527.935 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Archaeoglobus fulgidus (archaea) / Gene: XD40_0572 / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: A0A117KMF0 #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.29 Å3/Da / Density % sol: 46.31 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, sitting drop Details: 5% MPD, 40 mM magnesium chloride, 50 mM sodium cacodylate pH 6 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: SYNCHROTRON / Site: Diamond / Beamline: I24 / Wavelength: 0.9999 Å |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jul 22, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9999 Å / Relative weight: 1 |
Reflection | Resolution: 2.29→39.02 Å / Num. obs: 30556 / % possible obs: 89 % / Redundancy: 6 % / CC1/2: 0.5 / Rrim(I) all: 0.048 / Net I/σ(I): 11.3 |
Reflection shell | Resolution: 2.29→2.37 Å / Num. unique obs: 463 / CC1/2: 0.5 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.29→39.02 Å / Cross valid method: FREE R-VALUE Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Displacement parameters | Biso mean: 68.23 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.29→39.02 Å
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Refine LS restraints |
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