Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.348→131.14 Å / Cor.coef. Fo:Fc: 0.971 / Cor.coef. Fo:Fc free: 0.966 / SU R Cruickshank DPI: 0.052 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.05 / SU Rfree Blow DPI: 0.051 / SU Rfree Cruickshank DPI: 0.049 Details: HYDROGENS WERE FULLY REFINED WITH FULL OCCUPANCY AT NUCLEAR POSITION.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.1641
12136
5.02 %
RANDOM
Rwork
0.1486
-
-
-
obs
0.1494
241670
68.6 %
-
Displacement parameters
Biso mean: 21 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.1105 Å2
0 Å2
0 Å2
2-
-
0.1105 Å2
0 Å2
3-
-
-
-0.2211 Å2
Refine analyze
Luzzati coordinate error obs: 0.15 Å
Refinement step
Cycle: LAST / Resolution: 1.348→131.14 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
7536
0
165
1229
8930
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
Restraint function
Weight
X-RAY DIFFRACTION
t_bond_d
0.012
16043
HARMONIC
2
X-RAY DIFFRACTION
t_angle_deg
1.18
29177
HARMONIC
2
X-RAY DIFFRACTION
t_dihedral_angle_d
4813
SINUSOIDAL
2
X-RAY DIFFRACTION
t_incorr_chiral_ct
X-RAY DIFFRACTION
t_pseud_angle
X-RAY DIFFRACTION
t_trig_c_planes
X-RAY DIFFRACTION
t_gen_planes
2503
HARMONIC
5
X-RAY DIFFRACTION
t_it
16043
HARMONIC
10
X-RAY DIFFRACTION
t_nbd
X-RAY DIFFRACTION
t_omega_torsion
4.72
X-RAY DIFFRACTION
t_other_torsion
14.56
X-RAY DIFFRACTION
t_improper_torsion
X-RAY DIFFRACTION
t_chiral_improper_torsion
1023
SEMIHARMONIC
5
X-RAY DIFFRACTION
t_sum_occupancies
X-RAY DIFFRACTION
t_utility_distance
X-RAY DIFFRACTION
t_utility_angle
X-RAY DIFFRACTION
t_utility_torsion
X-RAY DIFFRACTION
t_ideal_dist_contact
16657
SEMIHARMONIC
4
LS refinement shell
Resolution: 1.35→1.44 Å / Total num. of bins used: 51
Rfactor
Num. reflection
% reflection
Rfree
0.264
242
5.01 %
Rwork
0.2436
4592
-
all
0.2446
4834
-
obs
-
-
7.95 %
Refinement TLS params.
Method: refined / Refine-ID: X-RAY DIFFRACTION
ID
L11 (°2)
L12 (°2)
L13 (°2)
L22 (°2)
L23 (°2)
L33 (°2)
S11 (Å °)
S12 (Å °)
S13 (Å °)
S21 (Å °)
S22 (Å °)
S23 (Å °)
S31 (Å °)
S32 (Å °)
S33 (Å °)
T11 (Å2)
T12 (Å2)
T13 (Å2)
T22 (Å2)
T23 (Å2)
T33 (Å2)
Origin x (Å)
Origin y (Å)
Origin z (Å)
1
0.083
0.0553
-0.0205
0.0643
-0.026
0.2978
0.0111
-0.0001
-0.0118
0.002
0.0076
-0.0156
-0.022
0.0715
-0.0188
-0.1544
-0.0049
0.0092
-0.1026
-0.0031
-0.1246
4.9093
-55.9609
13.731
2
0.0774
-0.0457
0.083
0.1028
-0.1045
0.1773
-0.0038
-0.0132
-0.0096
0.0069
0.0163
-0.0029
-0.062
-0.0515
-0.0126
-0.1231
0.0237
0.0073
-0.1134
0.0054
-0.1359
-34.633
-42.915
30.9021
Refinement TLS group
ID
Refine-ID
Refine TLS-ID
Selection details
1
X-RAY DIFFRACTION
1
{ A|* }
2
X-RAY DIFFRACTION
2
{ B|* }
+
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