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- PDB-8jr5: Crystal structure of Hendra Virus attachment(G) glycoprotein muta... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8jr5 | ||||||
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Title | Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N | ||||||
![]() | Glycoprotein G | ||||||
![]() | VIRAL PROTEIN / Hendra virus / Nipah virus / attachment glycoprotein | ||||||
Function / homology | ![]() exo-alpha-sialidase activity / host cell surface / host cell surface receptor binding / symbiont entry into host cell / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane / membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Li, Y.H. / Huang, X.Y. / Xu, J.J. / Chen, W. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of Hendra Virus attachment (G) glycoprotein mutant S586N Authors: Li, Y.H. / Huang, X.Y. / Xu, J.J. / Chen, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 173.3 KB | Display | ![]() |
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PDB format | ![]() | 135.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.6 MB | Display | ![]() |
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Full document | ![]() | 1.6 MB | Display | |
Data in XML | ![]() | 32.4 KB | Display | |
Data in CIF | ![]() | 43.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 46807.141 Da / Num. of mol.: 2 / Mutation: S586N Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: G / Production host: ![]() #2: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | #3: Sugar | ChemComp-NAG / Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.55 Å3/Da / Density % sol: 65.37 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / Details: PEG3350 14%, 10mM MgCl2, 5mM NiCL2, PIPES 6.5 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER2 S 9M / Detector: PIXEL / Date: Jun 17, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9789 Å / Relative weight: 1 |
Reflection | Resolution: 3.3→50 Å / Num. obs: 19331 / % possible obs: 98.52 % / Redundancy: 6.2 % / CC1/2: 0.98 / Net I/σ(I): 12.68 |
Reflection shell | Resolution: 3.3→3.418 Å / Num. unique obs: 19216 / CC1/2: 0.98 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.3→41.59 Å
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Refine LS restraints |
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LS refinement shell |
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