[English] 日本語
![](img/lk-miru.gif)
- PDB-8jhp: Another hairpin structure found in the RNA element involved in pi... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 8jhp | ||||||
---|---|---|---|---|---|---|---|
Title | Another hairpin structure found in the RNA element involved in piRNA biogenesis | ||||||
![]() | RNA (27-MER) | ||||||
![]() | RNA / cis element | ||||||
Function / homology | RNA / RNA (> 10)![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Takase, N. / Kawai, G. | ||||||
Funding support | 1items
| ||||||
![]() | ![]() Title: Another hairpin structure found in the RNA element involved in piRNA biogenesis Authors: Takase, N. / Kawai, G. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 183.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 154 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 532.4 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 619.2 KB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 15.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
---|---|
Other databases |
|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: RNA chain | Mass: 8642.199 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-
Sample preparation
Details | Type: solution / Contents: 0.13 mM RNA (27-MER), 95% H2O/5% D2O / Label: sample_1 / Solvent system: 95% H2O/5% D2O |
---|---|
Sample | Conc.: 0.13 mM / Component: RNA (27-MER) / Isotopic labeling: none |
Sample conditions | Ionic strength: 50 mM / Label: condition_1 / pH: 6.5 / Pressure: 1 atm / Temperature: 288 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE NEO / Manufacturer: Bruker / Model: AVANCE NEO / Field strength: 600 MHz |
---|
-
Processing
NMR software |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing / Software ordinal: 2 | ||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 11 |