- PDB-8jc5: Crystal structure of PLEKHM1 RUN domain in complex with GTP-bound... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 8jc5
Title
Crystal structure of PLEKHM1 RUN domain in complex with GTP-bound Arl8b(Q75L)
Components
ADP-ribosylation factor-like protein 8B
Pleckstrin homology domain-containing family M member 1
Keywords
PROTEIN BINDING / PLEKHM1 / RUN / Arl8b / GTP-bound / GTPase / Arf
Function / homology
Function and homology information
antigen processing and presentation of polysaccharide antigen via MHC class II / antigen processing and presentation following phagocytosis / viral exocytosis / calcium ion regulated lysosome exocytosis / endosome to lysosome transport of low-density lipoprotein particle / protein localization to early endosome / phagosome-lysosome fusion / early endosome to Golgi transport / cytolytic granule membrane / late endosome to lysosome transport ...antigen processing and presentation of polysaccharide antigen via MHC class II / antigen processing and presentation following phagocytosis / viral exocytosis / calcium ion regulated lysosome exocytosis / endosome to lysosome transport of low-density lipoprotein particle / protein localization to early endosome / phagosome-lysosome fusion / early endosome to Golgi transport / cytolytic granule membrane / late endosome to lysosome transport / autophagosome-lysosome fusion / autolysosome membrane / lysosome localization / plasma membrane repair / anterograde axonal transport / positive regulation of ruffle assembly / natural killer cell mediated cytotoxicity / beta-tubulin binding / autolysosome / alpha-tubulin binding / spindle midzone / positive regulation of bone resorption / axon cytoplasm / small monomeric GTPase / chromosome segregation / GDP binding / late endosome membrane / protein transport / G protein activity / midbody / early endosome membrane / lysosome / lysosomal membrane / cell division / GTPase activity / intracellular membrane-bounded organelle / synapse / GTP binding / nucleolus / extracellular exosome / zinc ion binding / nucleoplasm / membrane / cytosol / cytoplasm Similarity search - Function
PLEKHM1, PH domain / : / : / Rubicon Homology Domain / ADP-ribosylation factor-like protein 8A/8B / Rubicon Homology Domain / DUF4206 / RUN / RUN domain / RUN domain superfamily ...PLEKHM1, PH domain / : / : / Rubicon Homology Domain / ADP-ribosylation factor-like protein 8A/8B / Rubicon Homology Domain / DUF4206 / RUN / RUN domain / RUN domain superfamily / RUN domain / RUN domain profile. / small GTPase Arf family profile. / Sar1p-like members of the Ras-family of small GTPases / Small GTPase superfamily, ARF/SAR type / ADP-ribosylation factor family / ARF-like small GTPases; ARF, ADP-ribosylation factor / Zinc finger phorbol-ester/DAG-type profile. / Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) / Protein kinase C-like, phorbol ester/diacylglycerol-binding domain / PH domain profile. / Pleckstrin homology domain. / Pleckstrin homology domain / Ras subfamily of RAS small GTPases / Rab subfamily of small GTPases / Small GTP-binding protein domain / PH-like domain superfamily / P-loop containing nucleoside triphosphate hydrolase Similarity search - Domain/homology
GUANOSINE-5'-TRIPHOSPHATE / ADP-ribosylation factor-like protein 8B / Pleckstrin homology domain-containing family M member 1 Similarity search - Component
A: ADP-ribosylation factor-like protein 8B B: ADP-ribosylation factor-like protein 8B C: Pleckstrin homology domain-containing family M member 1 D: Pleckstrin homology domain-containing family M member 1 hetero molecules
ADP-ribosylationfactor-likeprotein8B / ADP-ribosylation factor-like protein 10C / Novel small G protein indispensable for equal chromosome ...ADP-ribosylation factor-like protein 10C / Novel small G protein indispensable for equal chromosome segregation 1
Mass: 19400.438 Da / Num. of mol.: 2 / Mutation: Q75L Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: ARL8B, ARL10C, GIE1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9NVJ2, small monomeric GTPase
#2: Protein
Pleckstrinhomologydomain-containingfamilyMmember1 / PH domain-containing family M member 1 / 162 kDa adapter protein / AP162
Mass: 21899.371 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: PLEKHM1, KIAA0356 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9Y4G2