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Open data
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Basic information
Entry | Database: PDB / ID: 8j8e | ||||||
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Title | Human serum albumin-palladium(II) agent complex | ||||||
![]() | Serum albumin![]() | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() cellular response to calcium ion starvation / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhang, Z.L. / Zhang, J.Z. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of human serum albumin palladium(II) agent complex Authors: Zhang, Z.L. / Zhang, J.Z. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 240.9 KB | Display | ![]() |
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PDB format | ![]() | 191.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 66571.219 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: ALB, GIG20, GIG42, PRO0903, PRO1708, PRO2044, PRO2619, PRO2675, UNQ696/PRO1341 Production host: ![]() ![]() ![]() #2: Chemical | ChemComp-PLM / ![]() #3: Chemical | Mass: 389.791 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C15H15N4PdS / Feature type: SUBJECT OF INVESTIGATION #4: Water | ChemComp-HOH / | ![]() Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.42 Å3/Da / Density % sol: 49.13 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, sitting drop / Details: 30% PEG 3350, 0.05M PB 7.0, 5% G, 5% DMSO |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER2 S 9M / Detector: PIXEL / Date: Jan 5, 2023 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.5→91.96 Å / Num. obs: 42319 / % possible obs: 98.1 % / Redundancy: 3.3 % / Rmerge(I) obs: 0.177 / Net I/σ(I): 4.1 |
Reflection shell | Resolution: 2.5→2.56 Å / Redundancy: 3.5 % / Rmerge(I) obs: 0.177 / Num. unique obs: 3143 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 46.276 Å2
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Refinement step | Cycle: 1 / Resolution: 2.5→91.96 Å
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Refine LS restraints |
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