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Open data
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Basic information
Entry | Database: PDB / ID: 8j44 | ||||||
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Title | Reductive Aminase RA34-WT | ||||||
![]() | 6-phosphogluconate dehydrogenase NAD-binding protein | ||||||
![]() | OXIDOREDUCTASE / Reductive Aminase / keto ester / oxidoreductases | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Zheng, X.Y. / Xu, G.C. / Ni, Y. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Dynamic kinetic reductive resolution of cyclic keto esters by newly identified stereo complementary reductive aminases. Authors: Zheng, X.Y. / Xu, G.C. / Ni, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 123.2 KB | Display | ![]() |
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PDB format | ![]() | 94.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 24 KB | Display | |
Data in CIF | ![]() | 33.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8j43C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 30799.824 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: SSQG_04344 / Production host: ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.61 Å3/Da / Density % sol: 52.88 % |
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Crystal grow | Temperature: 289.2 K / Method: vapor diffusion, sitting drop / pH: 7.4 / Details: Tacsimate, MES monohydrate, PEG 4000 |
-Data collection
Diffraction | Mean temperature: 150 K / Serial crystal experiment: N |
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Diffraction source | Source: SEALED TUBE / Type: BRUKER D8 QUEST / Wavelength: 1.54178 Å |
Detector | Type: Bruker PHOTON II / Detector: PIXEL / Date: Nov 25, 2022 / Details: multilayer |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 2.25→23.25 Å / Num. obs: 30171 / % possible obs: 99.1 % / Redundancy: 4.2 % / Rpim(I) all: 0.047 / Net I/σ(I): 12.9 |
Reflection shell | Resolution: 2.25→2.32 Å / Num. unique obs: 2558 / Rpim(I) all: 0.266 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.734 Å2
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Refinement step | Cycle: 1 / Resolution: 2.25→23.25 Å
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Refine LS restraints |
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