- PDB-8ij9: Crystal structure of the ELKS1/Rab6B complex -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 8ij9
Title
Crystal structure of the ELKS1/Rab6B complex
Components
ELKS/Rab6-interacting/CAST family member 1
Ras-related protein Rab-6B
Keywords
PROTEIN BINDING / small GTPase / scaffold protein / protein complex
Function / homology
Function and homology information
regulation of calcium-dependent activation of synaptic vesicle fusion / structural constituent of presynaptic active zone / Retrograde transport at the Trans-Golgi-Network / maintenance of presynaptic active zone structure / TBC/RABGAPs / cytoskeleton of presynaptic active zone / protein localization to Golgi membrane / RAB geranylgeranylation / RAB GEFs exchange GTP for GDP on RABs / COPI-independent Golgi-to-ER retrograde traffic ...regulation of calcium-dependent activation of synaptic vesicle fusion / structural constituent of presynaptic active zone / Retrograde transport at the Trans-Golgi-Network / maintenance of presynaptic active zone structure / TBC/RABGAPs / cytoskeleton of presynaptic active zone / protein localization to Golgi membrane / RAB geranylgeranylation / RAB GEFs exchange GTP for GDP on RABs / COPI-independent Golgi-to-ER retrograde traffic / IkappaB kinase complex / neuromuscular synaptic transmission / regulation of presynaptic cytosolic calcium ion concentration / presynaptic active zone cytoplasmic component / myosin V binding / intra-Golgi vesicle-mediated transport / presynaptic cytosol / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum / retrograde transport, endosome to Golgi / synaptic vesicle priming / Golgi organization / endoplasmic reticulum-Golgi intermediate compartment / GABA-ergic synapse / endomembrane system / small monomeric GTPase / ciliary basal body / PDZ domain binding / intracellular protein transport / regulation of synaptic plasticity / small GTPase binding / protein transport / synaptic vesicle / presynapse / cytoplasmic vesicle / postsynaptic density / Golgi membrane / GTPase activity / centrosome / glutamatergic synapse / synapse / regulation of DNA-templated transcription / GTP binding / Golgi apparatus / membrane / cytoplasm / cytosol Similarity search - Function
Active zone protein ELKS / RIM-binding protein of the cytomatrix active zone / small GTPase Rab1 family profile. / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / Rab subfamily of small GTPases / Small GTP-binding protein domain / P-loop containing nucleoside triphosphate hydrolase Similarity search - Domain/homology
GUANOSINE-5'-TRIPHOSPHATE / TRIETHYLENE GLYCOL / Ras-related protein Rab-6B / ELKS/Rab6-interacting/CAST family member 1 Similarity search - Component
A: Ras-related protein Rab-6B B: Ras-related protein Rab-6B C: ELKS/Rab6-interacting/CAST family member 1 D: ELKS/Rab6-interacting/CAST family member 1 hetero molecules
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi