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Open data
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Basic information
Entry | Database: PDB / ID: 8idv | ||||||
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Title | Crystal structure of Fic protein from Mycoplasma mycoides | ||||||
![]() | Cell filamentation protein Fic | ||||||
![]() | TRANSFERASE / Fic protein / AMP transferase | ||||||
Function / homology | protein adenylyltransferase / Fido-like domain superfamily / Fic/DOC family / Fido domain / Fido domain profile. / regulation of cell division / transferase activity / DI(HYDROXYETHYL)ETHER / protein adenylyltransferase![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhang, H. / Zhao, H.F. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of Fic protein from Mycoplasma mycoides Authors: Zhang, H. / Zhao, H.F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 158.1 KB | Display | ![]() |
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PDB format | ![]() | 125.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 22624.238 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: MMC68J_00751 / Production host: ![]() ![]() #2: Chemical | ChemComp-MES / | #3: Chemical | ChemComp-PEG / Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.84 Å3/Da / Density % sol: 67.96 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 6 / Details: 0.1 M MES, 22% PEG400 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Mar 7, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9792 Å / Relative weight: 1 |
Reflection | Resolution: 3.499→50 Å / Num. obs: 18055 / % possible obs: 95.6 % / Redundancy: 18.5 % / Biso Wilson estimate: 122.4 Å2 / CC1/2: 0.998 / Rmerge(I) obs: 0.153 / Rrim(I) all: 0.168 / Net I/σ(I): 10.56 |
Reflection shell | Resolution: 3.5→3.71 Å / Redundancy: 11.6 % / Rmerge(I) obs: 0.921 / Mean I/σ(I) obs: 1.62 / Num. unique obs: 2873 / CC1/2: 0.793 / Rrim(I) all: 0.966 / % possible all: 88.7 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 139.589 Å2
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Refinement step | Cycle: 1 / Resolution: 3.5→44.19 Å
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Refine LS restraints |
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