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- PDB-8ib0: The amyloid structure of mouse RIPK1 RHIM-containing domain by so... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8ib0 | ||||||
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Title | The amyloid structure of mouse RIPK1 RHIM-containing domain by solid-state NMR | ||||||
![]() | Receptor-interacting serine/threonine-protein kinase 1 | ||||||
![]() | PROTEIN FIBRIL / ![]() | ||||||
Function / homology | ![]() : / : / TNF signaling / Regulation by c-FLIP / CASP8 activity is inhibited / Dimerization of procaspase-8 / RIPK1-mediated regulated necrosis / Caspase activation via Death Receptors in the presence of ligand / TRIF-mediated programmed cell death / TNFR1-induced proapoptotic signaling ...: / : / TNF signaling / Regulation by c-FLIP / CASP8 activity is inhibited / Dimerization of procaspase-8 / RIPK1-mediated regulated necrosis / Caspase activation via Death Receptors in the presence of ligand / TRIF-mediated programmed cell death / TNFR1-induced proapoptotic signaling / regulation of ATP:ADP antiporter activity / ripoptosome assembly / positive regulation of interleukin-6-mediated signaling pathway / ripoptosome assembly involved in necroptotic process / : / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | SOLID-STATE NMR / ![]() | ||||||
![]() | Liu, J. / Xialian, W. | ||||||
Funding support | ![]()
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![]() | ![]() Title: The amyloid structure of mouse RIPK1 RHIM-containing domain by solid-state NMR Authors: Liu, J. / Lu, J.X. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 357 KB | Display | ![]() |
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PDB format | ![]() | 299.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2702.006 Da / Num. of mol.: 5 Source method: isolated from a genetically manipulated source Details: Gene ID: 19766 / Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() References: UniProt: Q60855, ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLID-STATE NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: ![]() | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 196 / Conformers submitted total number: 10 |