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Open data
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Basic information
Entry | Database: PDB / ID: 8hnq | ||||||
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Title | The structure of a alcohol dehydrogenase AKR13B2 with NADP | ||||||
![]() | NADPH-dependent aldo/keto reductase AKR13B2 | ||||||
![]() | TOXIN / dehydrogenase / DON / detoxification | ||||||
Function / homology | Aldo-keto reductase / NADP-dependent oxidoreductase domain / Aldo/keto reductase family / NADP-dependent oxidoreductase domain superfamily / oxidoreductase activity / NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE / 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE / NADPH-dependent aldo/keto reductase AKR13B2![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chen, M. / Yang, H. / Lu, F. | ||||||
Funding support | ![]()
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![]() | ![]() Title: The structure of AKR13B2 Authors: Chen, M. / Yang, H. / Lu, F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 84.8 KB | Display | ![]() |
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PDB format | ![]() | 59.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.6 MB | Display | ![]() |
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Full document | ![]() | 1.6 MB | Display | |
Data in XML | ![]() | 18.2 KB | Display | |
Data in CIF | ![]() | 28.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 31355.641 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-GOL / | ||||
#3: Chemical | ChemComp-NAP / | ||||
#4: Chemical | #5: Water | ChemComp-HOH / | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.99 Å3/Da / Density % sol: 58.91 % |
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Crystal grow | Temperature: 293 K / Method: evaporation / Details: PEG3350, TRIS |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Oct 18, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.987 Å / Relative weight: 1 |
Reflection | Resolution: 2→33.79 Å / Num. obs: 26019 / % possible obs: 95.84 % / Redundancy: 5.6 % / CC1/2: 0.993 / Net I/σ(I): 15.94 |
Reflection shell | Resolution: 2→2.072 Å / Num. unique obs: 2555 / CC1/2: 0.947 / % possible all: 95.91 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→33.79 Å
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Refine LS restraints |
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LS refinement shell |
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