PDB-8h58: Crystal structure of YhaJ effector binding domain

IDまたはキーワード:

登録情報

データベース: PDB / ID: 8h58

タイトル

Crystal structure of YhaJ effector binding domain

要素

HTH-type transcriptional regulator YhaJ

キーワード

TRANSCRIPTION

機能・相同性

機能・相同性情報

transcription cis-regulatory region binding / DNA-binding transcription factor activity
類似検索 - 分子機能

生物種

Escherichia coli K-12 (大腸菌)

手法

X線回折 /

シンクロトロン /

分子置換 / 解像度: 2.639 Å

データ登録者

Kim, M. / Ryu, S.E.

資金援助

韓国, 1件

引用

ジャーナル: Iscience / 年: 2023
タイトル: Structural basis of transcription factor YhaJ for DNT detection.
著者: Kim, M. / Kang, R. / Jeon, T.J. / Ryu, S.E.

履歴

登録	2022年10月12日	登録サイト: PDBJ / 処理サイト: PDBJ
改定 1.0	2023年10月25日	Provider: repository / タイプ: Initial release
改定 1.1	2024年3月6日	Group: Source and taxonomy / カテゴリ: entity_src_gen Item: _entity_src_gen.gene_src_strain / _entity_src_gen.pdbx_gene_src_scientific_name ..._entity_src_gen.gene_src_strain / _entity_src_gen.pdbx_gene_src_scientific_name / _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id / _entity_src_gen.pdbx_host_org_scientific_name / _entity_src_gen.pdbx_host_org_strain

構造ビューア	分子: MolmilJmol/JSmol

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ダウンロード

PDBx/mmCIF形式	8h58.cif.gz	650.9 KB	表示	PDBx/mmCIF形式
PDB形式	pdb8h58.ent.gz	517.9 KB	表示	PDB形式
PDBx/mmJSON形式	8h58.json.gz		ツリー表示	PDBx/mmJSON形式
その他	その他のダウンロード

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検証レポート

文書・要旨	8h58_validation.pdf.gz	570.7 KB	表示	wwPDB検証レポート
文書・詳細版	8h58_full_validation.pdf.gz	644.2 KB	表示
XML形式データ	8h58_validation.xml.gz	115.5 KB	表示
CIF形式データ	8h58_validation.cif.gz	152.1 KB	表示
アーカイブディレクトリ	https://data.pdbj.org/pub/pdb/validation_reports/h5/8h58 ftp://data.pdbj.org/pub/pdb/validation_reports/h5/8h58	HTTPS FTP

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関連構造データ

関連構造データ	8h5aC C: 同じ文献を引用 (文献)
類似構造データ	類似検索 - 機能・相同性F&H 検索類似検索 - 機能F&H 検索類似検索 - 相同性F&H 検索

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リンク

PDBのページ	PDBj / wwPDB / NCBI

登録構造単位

A: HTH-type transcriptional regulator YhaJ

B: HTH-type transcriptional regulator YhaJ

C: HTH-type transcriptional regulator YhaJ

D: HTH-type transcriptional regulator YhaJ

E: HTH-type transcriptional regulator YhaJ

F: HTH-type transcriptional regulator YhaJ

G: HTH-type transcriptional regulator YhaJ

H: HTH-type transcriptional regulator YhaJ

I: HTH-type transcriptional regulator YhaJ

J: HTH-type transcriptional regulator YhaJ

K: HTH-type transcriptional regulator YhaJ

L: HTH-type transcriptional regulator YhaJ

M: HTH-type transcriptional regulator YhaJ

N: HTH-type transcriptional regulator YhaJ

O: HTH-type transcriptional regulator YhaJ

P: HTH-type transcriptional regulator YhaJ

ヘテロ分子

370 kDa, 16 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

1

A: HTH-type transcriptional regulator YhaJ

B: HTH-type transcriptional regulator YhaJ

C: HTH-type transcriptional regulator YhaJ

D: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
根拠: gel filtration
92.6 kDa, 4 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

2

G: HTH-type transcriptional regulator YhaJ

H: HTH-type transcriptional regulator YhaJ

ヘテロ分子

E: HTH-type transcriptional regulator YhaJ

F: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
92.6 kDa, 4 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

3

I: HTH-type transcriptional regulator YhaJ

J: HTH-type transcriptional regulator YhaJ

K: HTH-type transcriptional regulator YhaJ

L: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
92.6 kDa, 4 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

4

M: HTH-type transcriptional regulator YhaJ

N: HTH-type transcriptional regulator YhaJ

ヘテロ分子

O: HTH-type transcriptional regulator YhaJ

P: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
92.6 kDa, 4 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

単位格子

Length a, b, c (Å)	215.193, 215.193, 263.409
Angle α, β, γ (deg.)	90.000, 90.000, 120.000
Int Tables number	146
Space group name H-M	H3

非結晶学的対称性 (NCS)

NCSドメイン:
NCSドメイン領域:

Dom-ID	Component-ID	Ens-ID	Beg auth comp-ID	Beg label comp-ID	End auth comp-ID	End label comp-ID	Auth asym-ID	Label asym-ID	Auth seq-ID	Label seq-ID
1	1	1	THR	THR	PHE	PHE	A	A	97 - 295	6 - 204
2	2	1	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
3	3	2	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
4	4	2	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
5	5	3	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
6	6	3	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
7	7	4	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
8	8	4	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
9	9	5	THR	THR	GLY	GLY	A	A	97 - 297	6 - 206
10	10	5	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
11	11	6	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
12	12	6	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
13	13	7	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
14	14	7	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
15	15	8	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
16	16	8	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
17	17	9	THR	THR	GLY	GLY	A	A	97 - 297	6 - 206
18	18	9	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
19	19	10	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
20	20	10	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
21	21	11	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
22	22	11	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
23	23	12	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
24	24	12	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
25	25	13	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
26	26	13	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
27	27	14	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
28	28	14	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
29	29	15	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
30	30	15	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
31	31	16	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
32	32	16	THR	THR	PHE	PHE	C	C	97 - 295	6 - 204
33	33	17	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
34	34	17	MET	MET	PHE	PHE	D	D	95 - 295	4 - 204
35	35	18	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
36	36	18	THR	THR	PHE	PHE	E	E	97 - 295	6 - 204
37	37	19	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
38	38	19	MET	MET	PHE	PHE	F	F	95 - 295	4 - 204
39	39	20	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
40	40	20	THR	THR	PHE	PHE	G	G	97 - 295	6 - 204
41	41	21	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
42	42	21	MET	MET	PHE	PHE	H	H	95 - 295	4 - 204
43	43	22	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
44	44	22	THR	THR	PHE	PHE	I	I	97 - 295	6 - 204
45	45	23	MET	MET	ASN	ASN	B	B	95 - 296	4 - 205
46	46	23	MET	MET	ASN	ASN	J	J	95 - 296	4 - 205
47	47	24	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
48	48	24	THR	THR	PHE	PHE	K	K	97 - 295	6 - 204
49	49	25	MET	MET	ASN	ASN	B	B	95 - 296	4 - 205
50	50	25	MET	MET	ASN	ASN	L	L	95 - 296	4 - 205
51	51	26	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
52	52	26	THR	THR	PHE	PHE	M	M	97 - 295	6 - 204
53	53	27	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
54	54	27	MET	MET	PHE	PHE	N	N	95 - 295	4 - 204
55	55	28	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
56	56	28	THR	THR	PHE	PHE	O	O	97 - 295	6 - 204
57	57	29	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
58	58	29	MET	MET	PHE	PHE	P	P	95 - 295	4 - 204
59	59	30	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
60	60	30	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
61	61	31	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
62	62	31	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
63	63	32	THR	THR	GLY	GLY	C	C	97 - 297	6 - 206
64	64	32	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
65	65	33	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
66	66	33	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
67	67	34	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
68	68	34	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
69	69	35	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
70	70	35	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
71	71	36	THR	THR	GLY	GLY	C	C	97 - 297	6 - 206
72	72	36	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
73	73	37	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
74	74	37	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
75	75	38	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
76	76	38	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
77	77	39	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
78	78	39	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
79	79	40	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
80	80	40	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
81	81	41	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
82	82	41	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
83	83	42	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
84	84	42	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
85	85	43	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
86	86	43	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
87	87	44	MET	MET	ASN	ASN	D	D	95 - 296	4 - 205
88	88	44	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
89	89	45	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
90	90	45	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
91	91	46	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
92	92	46	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
93	93	47	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
94	94	47	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
95	95	48	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
96	96	48	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
97	97	49	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
98	98	49	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
99	99	50	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
100	100	50	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
101	101	51	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
102	102	51	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
103	103	52	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
104	104	52	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
105	105	53	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
106	106	53	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
107	107	54	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
108	108	54	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
109	109	55	THR	THR	GLY	GLY	E	E	97 - 297	6 - 206
110	110	55	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
111	111	56	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
112	112	56	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
113	113	57	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
114	114	57	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
115	115	58	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
116	116	58	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
117	117	59	THR	THR	GLY	GLY	E	E	97 - 297	6 - 206
118	118	59	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
119	119	60	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
120	120	60	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
121	121	61	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
122	122	61	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
123	123	62	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
124	124	62	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
125	125	63	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
126	126	63	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
127	127	64	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
128	128	64	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
129	129	65	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
130	130	65	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
131	131	66	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
132	132	66	THR	THR	GLY	GLY	G	G	97 - 297	6 - 206
133	133	67	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
134	134	67	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
135	135	68	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
136	136	68	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
137	137	69	MET	MET	GLY	GLY	F	F	95 - 297	4 - 206
138	138	69	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
139	139	70	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
140	140	70	THR	THR	GLY	GLY	K	K	97 - 297	6 - 206
141	141	71	MET	MET	GLY	GLY	F	F	95 - 297	4 - 206
142	142	71	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
143	143	72	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
144	144	72	THR	THR	GLY	GLY	M	M	97 - 297	6 - 206
145	145	73	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
146	146	73	MET	MET	ASN	ASN	N	N	95 - 296	4 - 205
147	147	74	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
148	148	74	THR	THR	GLY	GLY	O	O	97 - 297	6 - 206
149	149	75	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
150	150	75	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
151	151	76	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
152	152	76	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
153	153	77	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
154	154	77	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
155	155	78	THR	THR	GLY	GLY	G	G	97 - 297	6 - 206
156	156	78	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
157	157	79	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
158	158	79	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
159	159	80	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
160	160	80	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
161	161	81	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
162	162	81	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
163	163	82	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
164	164	82	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
165	165	83	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
166	166	83	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
167	167	84	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
168	168	84	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
169	169	85	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
170	170	85	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
171	171	86	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
172	172	86	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
173	173	87	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
174	174	87	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
175	175	88	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
176	176	88	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
177	177	89	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
178	178	89	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
179	179	90	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
180	180	90	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
181	181	91	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
182	182	91	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
183	183	92	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
184	184	92	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
185	185	93	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
186	186	93	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
187	187	94	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
188	188	94	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
189	189	95	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
190	190	95	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
191	191	96	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
192	192	96	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
193	193	97	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
194	194	97	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
195	195	98	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
196	196	98	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
197	197	99	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
198	198	99	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
199	199	100	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
200	200	100	THR	THR	GLY	GLY	K	K	97 - 297	6 - 206
201	201	101	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
202	202	101	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
203	203	102	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
204	204	102	THR	THR	GLY	GLY	M	M	97 - 297	6 - 206
205	205	103	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
206	206	103	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
207	207	104	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
208	208	104	THR	THR	GLY	GLY	O	O	97 - 297	6 - 206
209	209	105	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
210	210	105	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
211	211	106	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
212	212	106	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
213	213	107	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
214	214	107	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
215	215	108	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
216	216	108	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
217	217	109	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
218	218	109	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
219	219	110	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
220	220	110	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
221	221	111	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
222	222	111	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
223	223	112	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
224	224	112	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
225	225	113	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
226	226	113	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
227	227	114	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
228	228	114	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
229	229	115	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
230	230	115	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
231	231	116	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
232	232	116	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
233	233	117	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
234	234	117	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
235	235	118	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
236	236	118	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
237	237	119	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
238	238	119	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
239	239	120	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
240	240	120	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205

NCSアンサンブル:

ID	詳細
1	Local NCS retraints between domains: 1 2
2	Local NCS retraints between domains: 3 4
3	Local NCS retraints between domains: 5 6
4	Local NCS retraints between domains: 7 8
5	Local NCS retraints between domains: 9 10
6	Local NCS retraints between domains: 11 12
7	Local NCS retraints between domains: 13 14
8	Local NCS retraints between domains: 15 16
9	Local NCS retraints between domains: 17 18
10	Local NCS retraints between domains: 19 20
11	Local NCS retraints between domains: 21 22
12	Local NCS retraints between domains: 23 24
13	Local NCS retraints between domains: 25 26
14	Local NCS retraints between domains: 27 28
15	Local NCS retraints between domains: 29 30
16	Local NCS retraints between domains: 31 32
17	Local NCS retraints between domains: 33 34
18	Local NCS retraints between domains: 35 36
19	Local NCS retraints between domains: 37 38
20	Local NCS retraints between domains: 39 40
21	Local NCS retraints between domains: 41 42
22	Local NCS retraints between domains: 43 44
23	Local NCS retraints between domains: 45 46
24	Local NCS retraints between domains: 47 48
25	Local NCS retraints between domains: 49 50
26	Local NCS retraints between domains: 51 52
27	Local NCS retraints between domains: 53 54
28	Local NCS retraints between domains: 55 56
29	Local NCS retraints between domains: 57 58
30	Local NCS retraints between domains: 59 60
31	Local NCS retraints between domains: 61 62
32	Local NCS retraints between domains: 63 64
33	Local NCS retraints between domains: 65 66
34	Local NCS retraints between domains: 67 68
35	Local NCS retraints between domains: 69 70
36	Local NCS retraints between domains: 71 72
37	Local NCS retraints between domains: 73 74
38	Local NCS retraints between domains: 75 76
39	Local NCS retraints between domains: 77 78
40	Local NCS retraints between domains: 79 80
41	Local NCS retraints between domains: 81 82
42	Local NCS retraints between domains: 83 84
43	Local NCS retraints between domains: 85 86
44	Local NCS retraints between domains: 87 88
45	Local NCS retraints between domains: 89 90
46	Local NCS retraints between domains: 91 92
47	Local NCS retraints between domains: 93 94
48	Local NCS retraints between domains: 95 96
49	Local NCS retraints between domains: 97 98
50	Local NCS retraints between domains: 99 100
51	Local NCS retraints between domains: 101 102
52	Local NCS retraints between domains: 103 104
53	Local NCS retraints between domains: 105 106
54	Local NCS retraints between domains: 107 108
55	Local NCS retraints between domains: 109 110
56	Local NCS retraints between domains: 111 112
57	Local NCS retraints between domains: 113 114
58	Local NCS retraints between domains: 115 116
59	Local NCS retraints between domains: 117 118
60	Local NCS retraints between domains: 119 120
61	Local NCS retraints between domains: 121 122
62	Local NCS retraints between domains: 123 124
63	Local NCS retraints between domains: 125 126
64	Local NCS retraints between domains: 127 128
65	Local NCS retraints between domains: 129 130
66	Local NCS retraints between domains: 131 132
67	Local NCS retraints between domains: 133 134
68	Local NCS retraints between domains: 135 136
69	Local NCS retraints between domains: 137 138
70	Local NCS retraints between domains: 139 140
71	Local NCS retraints between domains: 141 142
72	Local NCS retraints between domains: 143 144
73	Local NCS retraints between domains: 145 146
74	Local NCS retraints between domains: 147 148
75	Local NCS retraints between domains: 149 150
76	Local NCS retraints between domains: 151 152
77	Local NCS retraints between domains: 153 154
78	Local NCS retraints between domains: 155 156
79	Local NCS retraints between domains: 157 158
80	Local NCS retraints between domains: 159 160
81	Local NCS retraints between domains: 161 162
82	Local NCS retraints between domains: 163 164
83	Local NCS retraints between domains: 165 166
84	Local NCS retraints between domains: 167 168
85	Local NCS retraints between domains: 169 170
86	Local NCS retraints between domains: 171 172
87	Local NCS retraints between domains: 173 174
88	Local NCS retraints between domains: 175 176
89	Local NCS retraints between domains: 177 178
90	Local NCS retraints between domains: 179 180
91	Local NCS retraints between domains: 181 182
92	Local NCS retraints between domains: 183 184
93	Local NCS retraints between domains: 185 186
94	Local NCS retraints between domains: 187 188
95	Local NCS retraints between domains: 189 190
96	Local NCS retraints between domains: 191 192
97	Local NCS retraints between domains: 193 194
98	Local NCS retraints between domains: 195 196
99	Local NCS retraints between domains: 197 198
100	Local NCS retraints between domains: 199 200
101	Local NCS retraints between domains: 201 202
102	Local NCS retraints between domains: 203 204
103	Local NCS retraints between domains: 205 206
104	Local NCS retraints between domains: 207 208
105	Local NCS retraints between domains: 209 210
106	Local NCS retraints between domains: 211 212
107	Local NCS retraints between domains: 213 214
108	Local NCS retraints between domains: 215 216
109	Local NCS retraints between domains: 217 218
110	Local NCS retraints between domains: 219 220
111	Local NCS retraints between domains: 221 222
112	Local NCS retraints between domains: 223 224
113	Local NCS retraints between domains: 225 226
114	Local NCS retraints between domains: 227 228
115	Local NCS retraints between domains: 229 230
116	Local NCS retraints between domains: 231 232
117	Local NCS retraints between domains: 233 234
118	Local NCS retraints between domains: 235 236
119	Local NCS retraints between domains: 237 238
120	Local NCS retraints between domains: 239 240

#1: タンパク質	HTH-type transcriptional regulator YhaJ 分子量: 23123.719 Da / 分子数: 16 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli K-12 (大腸菌) / 株: K-12 / 遺伝子: yhaJ / 発現宿主: Escherichia coli DH5[alpha] (大腸菌) / 株 (発現宿主): DH5[alpha] / 参照: UniProt: P67661
#2: 化合物	ChemComp-NA / SODIUM ION / ナトリウムカチオン分子量: 22.990 Da / 分子数: 15 / 由来タイプ: 合成 / 式: Na
#3: 水	ChemComp-HOH / water 分子量: 18.015 Da / 分子数: 94 / 由来タイプ: 天然 / 式: H₂O
研究の焦点であるリガンドがあるか	N

-
実験

実験	手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶	マシュー密度: 3.15 Å³/Da / 溶媒含有率: 61 %
結晶化	温度: 291 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 7 / 詳細: 2.8M sodium acetate trihydrate pH 7.0

-
データ収集

回折

平均測定温度: 100 K / Serial crystal experiment: N

放射光源

由来:

シンクロトロン / サイト: PAL/PLS

/ ビームライン: 7A (6B, 6C1) / 波長: 0.97933 Å

検出器

タイプ: ADSC QUANTUM 315 / 検出器: CCD / 日付: 2022年3月24日

放射

プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray

放射波長

波長: 0.97933 Å / 相対比: 1

Reflection twin

タイプ	Crystal-ID	ID	Operator	Domain-ID	Fraction
pseudo-merohedral	1	1	H, K, L	1	0.1385
pseudo-merohedral	2	2	K, H, -L	2	0.1349
pseudo-merohedral	3	3	-2/3H-1/3K+2/3L, -1/3H-2/3K-2/3L, 2/3H-2/3K+1/3L	3	0.1242
pseudo-merohedral	4	4	-1/3H-2/3K-2/3L, -2/3H-1/3K+2/3L, -2/3H+2/3K-1/3L	4	0.124
pseudo-merohedral	5	5	-1/3H+1/3K-2/3L, -K, -4/3H-2/3K+1/3L	5	0.1174
pseudo-merohedral	6	6	-K, -1/3H+1/3K-2/3L, 4/3H+2/3K-1/3L	6	0.1187
pseudo-merohedral	7	7	1/3H-1/3K+2/3L, -H, -2/3H-4/3K-1/3L	7	0.1201
pseudo-merohedral	8	8	-H, 1/3H-1/3K+2/3L, 2/3H+4/3K+1/3L	8	0.1221

反射

解像度: 2.639→36.91 Å / Num. obs: 131090 / % possible obs: 98.2 % / 冗長度: 4.1 % / CC_1/2: 0.995 / R_merge(I) obs: 0.088 / Net I/σ(I): 10.9

反射シェル

解像度: 2.639→2.74 Å / 冗長度: 2.8 % / R_merge(I) obs: 0.386 / Mean I/σ(I) obs: 2.6 / Num. unique obs: 12621 / CC_1/2: 0.352 / % possible all: 94.5

-
解析

ソフトウェア

名称	バージョン	分類
REFMAC	5.8.0267	精密化
HKL-2000	v715	データ削減
HKL-2000	v715	データスケーリング
PHASER	2.8.3	位相決定

精密化

構造決定の手法:

分子置換
開始モデル: AF_AFP67660F1

解像度: 2.639→36.905 Å / Cor.coef. F_o:F_c: 0.949 / Cor.coef. F_o:F_c free: 0.901 / WR_factor R_free: 0.219 / WR_factor R_work: 0.173 / SU B: 6.322 / SU ML: 0.145 / Average fsc free: 0.9714 / Average fsc work: 0.9853 / 交差検証法: FREE R-VALUE / ESU R: 0.108 / ESU R Free: 0.061 / 詳細: Hydrogens have not been used

	R_factor	反射数	%反射	Selection details
R_free	0.2358	6453	4.923 %	Random selection
R_work	0.177	124635	-	-
all	0.18	-	-	-
obs	-	131088	97.972 %	-

溶媒の処理

イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK BULK SOLVENT

原子変位パラメータ

B_iso mean: 54.601 Å²

	B_aniso -1	B_aniso -2	B_aniso -3
1-	-29.984 Å²	-0 Å²	-0 Å²
2-	-	-29.984 Å²	-0 Å²
3-	-	-	59.967 Å²

精密化ステップ

サイクル: LAST / 解像度: 2.639→36.905 Å

	タンパク質	核酸	リガンド	溶媒	全体
原子数	25421	0	15	94	25530

拘束条件

Refine-ID	タイプ	Dev ideal	Dev ideal target	数
X-RAY DIFFRACTION	r_bond_refined_d	0.01	0.012	25916
X-RAY DIFFRACTION	r_angle_refined_deg	1.647	1.644	35243
X-RAY DIFFRACTION	r_dihedral_angle_1_deg	6.448	5	3228
X-RAY DIFFRACTION	r_dihedral_angle_2_deg	31.653	20.8	1300
X-RAY DIFFRACTION	r_dihedral_angle_3_deg	19.333	15	4609
X-RAY DIFFRACTION	r_dihedral_angle_4_deg	21.834	15	239
X-RAY DIFFRACTION	r_chiral_restr	0.107	0.2	3583
X-RAY DIFFRACTION	r_gen_planes_refined	0.01	0.02	19155
X-RAY DIFFRACTION	r_nbd_refined	0.244	0.2	12243
X-RAY DIFFRACTION	r_nbtor_refined	0.31	0.2	17765
X-RAY DIFFRACTION	r_xyhbond_nbd_refined	0.207	0.2	663
X-RAY DIFFRACTION	r_metal_ion_refined	0.311	0.2	12
X-RAY DIFFRACTION	r_symmetry_nbd_refined	0.411	0.2	324
X-RAY DIFFRACTION	r_symmetry_xyhbond_nbd_refined	0.5	0.2	27
X-RAY DIFFRACTION	r_mcbond_it	6.691	5.458	12963
X-RAY DIFFRACTION	r_mcangle_it	9.567	8.178	16174
X-RAY DIFFRACTION	r_scbond_it	7.039	5.474	12953
X-RAY DIFFRACTION	r_scangle_it	9.31	8.156	19069
X-RAY DIFFRACTION	r_lrange_it	13.525	104.193	103498
X-RAY DIFFRACTION	r_ncsr_local_group_1	0.151	0.05	5706
X-RAY DIFFRACTION	r_ncsr_local_group_2	0.138	0.05	5908
X-RAY DIFFRACTION	r_ncsr_local_group_3	0.155	0.05	5629
X-RAY DIFFRACTION	r_ncsr_local_group_4	0.136	0.05	5931
X-RAY DIFFRACTION	r_ncsr_local_group_5	0.154	0.05	5714
X-RAY DIFFRACTION	r_ncsr_local_group_6	0.145	0.05	5849
X-RAY DIFFRACTION	r_ncsr_local_group_7	0.15	0.05	5718
X-RAY DIFFRACTION	r_ncsr_local_group_8	0.134	0.05	5906
X-RAY DIFFRACTION	r_ncsr_local_group_9	0.158	0.05	5684
X-RAY DIFFRACTION	r_ncsr_local_group_10	0.136	0.05	5857
X-RAY DIFFRACTION	r_ncsr_local_group_11	0.157	0.05	5648
X-RAY DIFFRACTION	r_ncsr_local_group_12	0.149	0.05	5828
X-RAY DIFFRACTION	r_ncsr_local_group_13	0.156	0.05	5721
X-RAY DIFFRACTION	r_ncsr_local_group_14	0.128	0.05	5948
X-RAY DIFFRACTION	r_ncsr_local_group_15	0.164	0.05	5588
X-RAY DIFFRACTION	r_ncsr_local_group_16	0.147	0.05	5683
X-RAY DIFFRACTION	r_ncsr_local_group_17	0.133	0.05	5905
X-RAY DIFFRACTION	r_ncsr_local_group_18	0.14	0.05	5722
X-RAY DIFFRACTION	r_ncsr_local_group_19	0.129	0.05	5906
X-RAY DIFFRACTION	r_ncsr_local_group_20	0.14	0.05	5717
X-RAY DIFFRACTION	r_ncsr_local_group_21	0.131	0.05	5865
X-RAY DIFFRACTION	r_ncsr_local_group_22	0.141	0.05	5756
X-RAY DIFFRACTION	r_ncsr_local_group_23	0.128	0.05	5949
X-RAY DIFFRACTION	r_ncsr_local_group_24	0.143	0.05	5697
X-RAY DIFFRACTION	r_ncsr_local_group_25	0.131	0.05	5814
X-RAY DIFFRACTION	r_ncsr_local_group_26	0.144	0.05	5742
X-RAY DIFFRACTION	r_ncsr_local_group_27	0.124	0.05	5951
X-RAY DIFFRACTION	r_ncsr_local_group_28	0.138	0.05	5786
X-RAY DIFFRACTION	r_ncsr_local_group_29	0.146	0.05	5777
X-RAY DIFFRACTION	r_ncsr_local_group_30	0.146	0.05	5643
X-RAY DIFFRACTION	r_ncsr_local_group_31	0.144	0.05	5831
X-RAY DIFFRACTION	r_ncsr_local_group_32	0.147	0.05	5725
X-RAY DIFFRACTION	r_ncsr_local_group_33	0.139	0.05	5867
X-RAY DIFFRACTION	r_ncsr_local_group_34	0.15	0.05	5665
X-RAY DIFFRACTION	r_ncsr_local_group_35	0.136	0.05	5819
X-RAY DIFFRACTION	r_ncsr_local_group_36	0.144	0.05	5688
X-RAY DIFFRACTION	r_ncsr_local_group_37	0.114	0.05	5972
X-RAY DIFFRACTION	r_ncsr_local_group_38	0.155	0.05	5698
X-RAY DIFFRACTION	r_ncsr_local_group_39	0.144	0.05	5812
X-RAY DIFFRACTION	r_ncsr_local_group_40	0.147	0.05	5732
X-RAY DIFFRACTION	r_ncsr_local_group_41	0.14	0.05	5883
X-RAY DIFFRACTION	r_ncsr_local_group_42	0.157	0.05	5595
X-RAY DIFFRACTION	r_ncsr_local_group_43	0.151	0.05	5666
X-RAY DIFFRACTION	r_ncsr_local_group_44	0.131	0.05	5868
X-RAY DIFFRACTION	r_ncsr_local_group_45	0.145	0.05	5662
X-RAY DIFFRACTION	r_ncsr_local_group_46	0.126	0.05	5874
X-RAY DIFFRACTION	r_ncsr_local_group_47	0.149	0.05	5685
X-RAY DIFFRACTION	r_ncsr_local_group_48	0.126	0.05	5845
X-RAY DIFFRACTION	r_ncsr_local_group_49	0.147	0.05	5611
X-RAY DIFFRACTION	r_ncsr_local_group_50	0.118	0.05	5933
X-RAY DIFFRACTION	r_ncsr_local_group_51	0.154	0.05	5658
X-RAY DIFFRACTION	r_ncsr_local_group_52	0.123	0.05	5902
X-RAY DIFFRACTION	r_ncsr_local_group_53	0.151	0.05	5690
X-RAY DIFFRACTION	r_ncsr_local_group_54	0.139	0.05	5752
X-RAY DIFFRACTION	r_ncsr_local_group_55	0.156	0.05	5706
X-RAY DIFFRACTION	r_ncsr_local_group_56	0.143	0.05	5867
X-RAY DIFFRACTION	r_ncsr_local_group_57	0.146	0.05	5704
X-RAY DIFFRACTION	r_ncsr_local_group_58	0.136	0.05	5924
X-RAY DIFFRACTION	r_ncsr_local_group_59	0.151	0.05	5673
X-RAY DIFFRACTION	r_ncsr_local_group_60	0.138	0.05	5806
X-RAY DIFFRACTION	r_ncsr_local_group_61	0.157	0.05	5655
X-RAY DIFFRACTION	r_ncsr_local_group_62	0.133	0.05	5911
X-RAY DIFFRACTION	r_ncsr_local_group_63	0.149	0.05	5713
X-RAY DIFFRACTION	r_ncsr_local_group_64	0.132	0.05	5979
X-RAY DIFFRACTION	r_ncsr_local_group_65	0.155	0.05	5605
X-RAY DIFFRACTION	r_ncsr_local_group_66	0.135	0.05	5708
X-RAY DIFFRACTION	r_ncsr_local_group_67	0.128	0.05	5875
X-RAY DIFFRACTION	r_ncsr_local_group_68	0.142	0.05	5692
X-RAY DIFFRACTION	r_ncsr_local_group_69	0.126	0.05	5836
X-RAY DIFFRACTION	r_ncsr_local_group_70	0.14	0.05	5682
X-RAY DIFFRACTION	r_ncsr_local_group_71	0.134	0.05	5832
X-RAY DIFFRACTION	r_ncsr_local_group_72	0.151	0.05	5729
X-RAY DIFFRACTION	r_ncsr_local_group_73	0.116	0.05	6015
X-RAY DIFFRACTION	r_ncsr_local_group_74	0.14	0.05	5722
X-RAY DIFFRACTION	r_ncsr_local_group_75	0.139	0.05	5794
X-RAY DIFFRACTION	r_ncsr_local_group_76	0.139	0.05	5667
X-RAY DIFFRACTION	r_ncsr_local_group_77	0.138	0.05	5892
X-RAY DIFFRACTION	r_ncsr_local_group_78	0.142	0.05	5650
X-RAY DIFFRACTION	r_ncsr_local_group_79	0.145	0.05	5828
X-RAY DIFFRACTION	r_ncsr_local_group_80	0.146	0.05	5641
X-RAY DIFFRACTION	r_ncsr_local_group_81	0.136	0.05	5840
X-RAY DIFFRACTION	r_ncsr_local_group_82	0.14	0.05	5699
X-RAY DIFFRACTION	r_ncsr_local_group_83	0.125	0.05	6046
X-RAY DIFFRACTION	r_ncsr_local_group_84	0.15	0.05	5614
X-RAY DIFFRACTION	r_ncsr_local_group_85	0.149	0.05	5675
X-RAY DIFFRACTION	r_ncsr_local_group_86	0.141	0.05	5861
X-RAY DIFFRACTION	r_ncsr_local_group_87	0.152	0.05	5660
X-RAY DIFFRACTION	r_ncsr_local_group_88	0.128	0.05	5830
X-RAY DIFFRACTION	r_ncsr_local_group_89	0.146	0.05	5694
X-RAY DIFFRACTION	r_ncsr_local_group_90	0.124	0.05	5957
X-RAY DIFFRACTION	r_ncsr_local_group_91	0.14	0.05	5746
X-RAY DIFFRACTION	r_ncsr_local_group_92	0.141	0.05	5927
X-RAY DIFFRACTION	r_ncsr_local_group_93	0.15	0.05	5686
X-RAY DIFFRACTION	r_ncsr_local_group_94	0.126	0.05	5854
X-RAY DIFFRACTION	r_ncsr_local_group_95	0.152	0.05	5645
X-RAY DIFFRACTION	r_ncsr_local_group_96	0.136	0.05	5880
X-RAY DIFFRACTION	r_ncsr_local_group_97	0.145	0.05	5696
X-RAY DIFFRACTION	r_ncsr_local_group_98	0.132	0.05	5910
X-RAY DIFFRACTION	r_ncsr_local_group_99	0.157	0.05	5589
X-RAY DIFFRACTION	r_ncsr_local_group_100	0.144	0.05	5685
X-RAY DIFFRACTION	r_ncsr_local_group_101	0.131	0.05	5832
X-RAY DIFFRACTION	r_ncsr_local_group_102	0.15	0.05	5704
X-RAY DIFFRACTION	r_ncsr_local_group_103	0.134	0.05	5864
X-RAY DIFFRACTION	r_ncsr_local_group_104	0.153	0.05	5684
X-RAY DIFFRACTION	r_ncsr_local_group_105	0.15	0.05	5758
X-RAY DIFFRACTION	r_ncsr_local_group_106	0.152	0.05	5634
X-RAY DIFFRACTION	r_ncsr_local_group_107	0.144	0.05	5736
X-RAY DIFFRACTION	r_ncsr_local_group_108	0.149	0.05	5690
X-RAY DIFFRACTION	r_ncsr_local_group_109	0.137	0.05	5836
X-RAY DIFFRACTION	r_ncsr_local_group_110	0.159	0.05	5568
X-RAY DIFFRACTION	r_ncsr_local_group_111	0.156	0.05	5683
X-RAY DIFFRACTION	r_ncsr_local_group_112	0.126	0.05	5893
X-RAY DIFFRACTION	r_ncsr_local_group_113	0.149	0.05	5678
X-RAY DIFFRACTION	r_ncsr_local_group_114	0.138	0.05	5799
X-RAY DIFFRACTION	r_ncsr_local_group_115	0.151	0.05	5744
X-RAY DIFFRACTION	r_ncsr_local_group_116	0.138	0.05	5881
X-RAY DIFFRACTION	r_ncsr_local_group_117	0.155	0.05	5596
X-RAY DIFFRACTION	r_ncsr_local_group_118	0.143	0.05	5770
X-RAY DIFFRACTION	r_ncsr_local_group_119	0.138	0.05	5866
X-RAY DIFFRACTION	r_ncsr_local_group_120	0.157	0.05	5635

Refine LS restraints NCS

Ens-ID	Dom-ID	Auth asym-ID	Refine-ID	タイプ	Rms dev position (Å)	Weight position
1	1	A	X-RAY DIFFRACTION	Local ncs	0.15062	0.05009
1	2	B	X-RAY DIFFRACTION	Local ncs	0.15062	0.05009
2	3	A	X-RAY DIFFRACTION	Local ncs	0.13778	0.0501
2	4	C	X-RAY DIFFRACTION	Local ncs	0.13778	0.0501
3	5	A	X-RAY DIFFRACTION	Local ncs	0.15538	0.05009
3	6	D	X-RAY DIFFRACTION	Local ncs	0.15538	0.05009
4	7	A	X-RAY DIFFRACTION	Local ncs	0.13571	0.0501
4	8	E	X-RAY DIFFRACTION	Local ncs	0.13571	0.0501
5	9	A	X-RAY DIFFRACTION	Local ncs	0.15399	0.0501
5	10	F	X-RAY DIFFRACTION	Local ncs	0.15399	0.0501
6	11	A	X-RAY DIFFRACTION	Local ncs	0.1452	0.0501
6	12	G	X-RAY DIFFRACTION	Local ncs	0.1452	0.0501
7	13	A	X-RAY DIFFRACTION	Local ncs	0.14965	0.0501
7	14	H	X-RAY DIFFRACTION	Local ncs	0.14965	0.0501
8	15	A	X-RAY DIFFRACTION	Local ncs	0.13418	0.0501
8	16	I	X-RAY DIFFRACTION	Local ncs	0.13418	0.0501
9	17	A	X-RAY DIFFRACTION	Local ncs	0.15787	0.05009
9	18	J	X-RAY DIFFRACTION	Local ncs	0.15787	0.05009
10	19	A	X-RAY DIFFRACTION	Local ncs	0.1364	0.0501
10	20	K	X-RAY DIFFRACTION	Local ncs	0.1364	0.0501
11	21	A	X-RAY DIFFRACTION	Local ncs	0.15732	0.0501
11	22	L	X-RAY DIFFRACTION	Local ncs	0.15732	0.0501
12	23	A	X-RAY DIFFRACTION	Local ncs	0.1486	0.0501
12	24	M	X-RAY DIFFRACTION	Local ncs	0.1486	0.0501
13	25	A	X-RAY DIFFRACTION	Local ncs	0.15605	0.05009
13	26	N	X-RAY DIFFRACTION	Local ncs	0.15605	0.05009
14	27	A	X-RAY DIFFRACTION	Local ncs	0.12845	0.0501
14	28	O	X-RAY DIFFRACTION	Local ncs	0.12845	0.0501
15	29	A	X-RAY DIFFRACTION	Local ncs	0.16438	0.05009
15	30	P	X-RAY DIFFRACTION	Local ncs	0.16438	0.05009
16	31	B	X-RAY DIFFRACTION	Local ncs	0.14704	0.05009
16	32	C	X-RAY DIFFRACTION	Local ncs	0.14704	0.05009
17	33	B	X-RAY DIFFRACTION	Local ncs	0.13347	0.0501
17	34	D	X-RAY DIFFRACTION	Local ncs	0.13347	0.0501
18	35	B	X-RAY DIFFRACTION	Local ncs	0.14031	0.0501
18	36	E	X-RAY DIFFRACTION	Local ncs	0.14031	0.0501
19	37	B	X-RAY DIFFRACTION	Local ncs	0.12906	0.0501
19	38	F	X-RAY DIFFRACTION	Local ncs	0.12906	0.0501
20	39	B	X-RAY DIFFRACTION	Local ncs	0.14044	0.0501
20	40	G	X-RAY DIFFRACTION	Local ncs	0.14044	0.0501
21	41	B	X-RAY DIFFRACTION	Local ncs	0.13069	0.0501
21	42	H	X-RAY DIFFRACTION	Local ncs	0.13069	0.0501
22	43	B	X-RAY DIFFRACTION	Local ncs	0.14098	0.0501
22	44	I	X-RAY DIFFRACTION	Local ncs	0.14098	0.0501
23	45	B	X-RAY DIFFRACTION	Local ncs	0.12829	0.0501
23	46	J	X-RAY DIFFRACTION	Local ncs	0.12829	0.0501
24	47	B	X-RAY DIFFRACTION	Local ncs	0.14277	0.0501
24	48	K	X-RAY DIFFRACTION	Local ncs	0.14277	0.0501
25	49	B	X-RAY DIFFRACTION	Local ncs	0.13129	0.0501
25	50	L	X-RAY DIFFRACTION	Local ncs	0.13129	0.0501
26	51	B	X-RAY DIFFRACTION	Local ncs	0.1441	0.05009
26	52	M	X-RAY DIFFRACTION	Local ncs	0.1441	0.05009
27	53	B	X-RAY DIFFRACTION	Local ncs	0.12449	0.0501
27	54	N	X-RAY DIFFRACTION	Local ncs	0.12449	0.0501
28	55	B	X-RAY DIFFRACTION	Local ncs	0.13752	0.0501
28	56	O	X-RAY DIFFRACTION	Local ncs	0.13752	0.0501
29	57	B	X-RAY DIFFRACTION	Local ncs	0.14613	0.05009
29	58	P	X-RAY DIFFRACTION	Local ncs	0.14613	0.05009
30	59	C	X-RAY DIFFRACTION	Local ncs	0.14605	0.05009
30	60	D	X-RAY DIFFRACTION	Local ncs	0.14605	0.05009
31	61	C	X-RAY DIFFRACTION	Local ncs	0.14433	0.0501
31	62	E	X-RAY DIFFRACTION	Local ncs	0.14433	0.0501
32	63	C	X-RAY DIFFRACTION	Local ncs	0.14742	0.0501
32	64	F	X-RAY DIFFRACTION	Local ncs	0.14742	0.0501
33	65	C	X-RAY DIFFRACTION	Local ncs	0.13938	0.0501
33	66	G	X-RAY DIFFRACTION	Local ncs	0.13938	0.0501
34	67	C	X-RAY DIFFRACTION	Local ncs	0.15031	0.0501
34	68	H	X-RAY DIFFRACTION	Local ncs	0.15031	0.0501
35	69	C	X-RAY DIFFRACTION	Local ncs	0.1356	0.0501
35	70	I	X-RAY DIFFRACTION	Local ncs	0.1356	0.0501
36	71	C	X-RAY DIFFRACTION	Local ncs	0.14359	0.0501
36	72	J	X-RAY DIFFRACTION	Local ncs	0.14359	0.0501
37	73	C	X-RAY DIFFRACTION	Local ncs	0.11407	0.0501
37	74	K	X-RAY DIFFRACTION	Local ncs	0.11407	0.0501
38	75	C	X-RAY DIFFRACTION	Local ncs	0.15486	0.0501
38	76	L	X-RAY DIFFRACTION	Local ncs	0.15486	0.0501
39	77	C	X-RAY DIFFRACTION	Local ncs	0.14423	0.0501
39	78	M	X-RAY DIFFRACTION	Local ncs	0.14423	0.0501
40	79	C	X-RAY DIFFRACTION	Local ncs	0.14735	0.0501
40	80	N	X-RAY DIFFRACTION	Local ncs	0.14735	0.0501
41	81	C	X-RAY DIFFRACTION	Local ncs	0.1403	0.0501
41	82	O	X-RAY DIFFRACTION	Local ncs	0.1403	0.0501
42	83	C	X-RAY DIFFRACTION	Local ncs	0.15723	0.05009
42	84	P	X-RAY DIFFRACTION	Local ncs	0.15723	0.05009
43	85	D	X-RAY DIFFRACTION	Local ncs	0.1515	0.0501
43	86	E	X-RAY DIFFRACTION	Local ncs	0.1515	0.0501
44	87	D	X-RAY DIFFRACTION	Local ncs	0.13096	0.0501
44	88	F	X-RAY DIFFRACTION	Local ncs	0.13096	0.0501
45	89	D	X-RAY DIFFRACTION	Local ncs	0.14524	0.0501
45	90	G	X-RAY DIFFRACTION	Local ncs	0.14524	0.0501
46	91	D	X-RAY DIFFRACTION	Local ncs	0.12601	0.0501
46	92	H	X-RAY DIFFRACTION	Local ncs	0.12601	0.0501
47	93	D	X-RAY DIFFRACTION	Local ncs	0.14862	0.0501
47	94	I	X-RAY DIFFRACTION	Local ncs	0.14862	0.0501
48	95	D	X-RAY DIFFRACTION	Local ncs	0.12584	0.0501
48	96	J	X-RAY DIFFRACTION	Local ncs	0.12584	0.0501
49	97	D	X-RAY DIFFRACTION	Local ncs	0.14707	0.05009
49	98	K	X-RAY DIFFRACTION	Local ncs	0.14707	0.05009
50	99	D	X-RAY DIFFRACTION	Local ncs	0.11799	0.0501
50	100	L	X-RAY DIFFRACTION	Local ncs	0.11799	0.0501
51	101	D	X-RAY DIFFRACTION	Local ncs	0.15413	0.05009
51	102	M	X-RAY DIFFRACTION	Local ncs	0.15413	0.05009
52	103	D	X-RAY DIFFRACTION	Local ncs	0.12288	0.0501
52	104	N	X-RAY DIFFRACTION	Local ncs	0.12288	0.0501
53	105	D	X-RAY DIFFRACTION	Local ncs	0.15138	0.0501
53	106	O	X-RAY DIFFRACTION	Local ncs	0.15138	0.0501
54	107	D	X-RAY DIFFRACTION	Local ncs	0.13906	0.0501
54	108	P	X-RAY DIFFRACTION	Local ncs	0.13906	0.0501
55	109	E	X-RAY DIFFRACTION	Local ncs	0.15581	0.0501
55	110	F	X-RAY DIFFRACTION	Local ncs	0.15581	0.0501
56	111	E	X-RAY DIFFRACTION	Local ncs	0.14291	0.0501
56	112	G	X-RAY DIFFRACTION	Local ncs	0.14291	0.0501
57	113	E	X-RAY DIFFRACTION	Local ncs	0.14619	0.0501
57	114	H	X-RAY DIFFRACTION	Local ncs	0.14619	0.0501
58	115	E	X-RAY DIFFRACTION	Local ncs	0.13593	0.0501
58	116	I	X-RAY DIFFRACTION	Local ncs	0.13593	0.0501
59	117	E	X-RAY DIFFRACTION	Local ncs	0.15075	0.05009
59	118	J	X-RAY DIFFRACTION	Local ncs	0.15075	0.05009
60	119	E	X-RAY DIFFRACTION	Local ncs	0.13828	0.0501
60	120	K	X-RAY DIFFRACTION	Local ncs	0.13828	0.0501
61	121	E	X-RAY DIFFRACTION	Local ncs	0.15662	0.0501
61	122	L	X-RAY DIFFRACTION	Local ncs	0.15662	0.0501
62	123	E	X-RAY DIFFRACTION	Local ncs	0.13316	0.0501
62	124	M	X-RAY DIFFRACTION	Local ncs	0.13316	0.0501
63	125	E	X-RAY DIFFRACTION	Local ncs	0.14863	0.05009
63	126	N	X-RAY DIFFRACTION	Local ncs	0.14863	0.05009
64	127	E	X-RAY DIFFRACTION	Local ncs	0.13241	0.0501
64	128	O	X-RAY DIFFRACTION	Local ncs	0.13241	0.0501
65	129	E	X-RAY DIFFRACTION	Local ncs	0.15522	0.05009
65	130	P	X-RAY DIFFRACTION	Local ncs	0.15522	0.05009
66	131	F	X-RAY DIFFRACTION	Local ncs	0.13456	0.0501
66	132	G	X-RAY DIFFRACTION	Local ncs	0.13456	0.0501
67	133	F	X-RAY DIFFRACTION	Local ncs	0.12782	0.0501
67	134	H	X-RAY DIFFRACTION	Local ncs	0.12782	0.0501
68	135	F	X-RAY DIFFRACTION	Local ncs	0.14197	0.0501
68	136	I	X-RAY DIFFRACTION	Local ncs	0.14197	0.0501
69	137	F	X-RAY DIFFRACTION	Local ncs	0.12575	0.0501
69	138	J	X-RAY DIFFRACTION	Local ncs	0.12575	0.0501
70	139	F	X-RAY DIFFRACTION	Local ncs	0.1404	0.0501
70	140	K	X-RAY DIFFRACTION	Local ncs	0.1404	0.0501
71	141	F	X-RAY DIFFRACTION	Local ncs	0.13432	0.0501
71	142	L	X-RAY DIFFRACTION	Local ncs	0.13432	0.0501
72	143	F	X-RAY DIFFRACTION	Local ncs	0.15101	0.0501
72	144	M	X-RAY DIFFRACTION	Local ncs	0.15101	0.0501
73	145	F	X-RAY DIFFRACTION	Local ncs	0.11583	0.0501
73	146	N	X-RAY DIFFRACTION	Local ncs	0.11583	0.0501
74	147	F	X-RAY DIFFRACTION	Local ncs	0.13995	0.0501
74	148	O	X-RAY DIFFRACTION	Local ncs	0.13995	0.0501
75	149	F	X-RAY DIFFRACTION	Local ncs	0.13942	0.0501
75	150	P	X-RAY DIFFRACTION	Local ncs	0.13942	0.0501
76	151	G	X-RAY DIFFRACTION	Local ncs	0.13913	0.0501
76	152	H	X-RAY DIFFRACTION	Local ncs	0.13913	0.0501
77	153	G	X-RAY DIFFRACTION	Local ncs	0.13763	0.0501
77	154	I	X-RAY DIFFRACTION	Local ncs	0.13763	0.0501
78	155	G	X-RAY DIFFRACTION	Local ncs	0.14172	0.05009
78	156	J	X-RAY DIFFRACTION	Local ncs	0.14172	0.05009
79	157	G	X-RAY DIFFRACTION	Local ncs	0.14465	0.0501
79	158	K	X-RAY DIFFRACTION	Local ncs	0.14465	0.0501
80	159	G	X-RAY DIFFRACTION	Local ncs	0.14591	0.0501
80	160	L	X-RAY DIFFRACTION	Local ncs	0.14591	0.0501
81	161	G	X-RAY DIFFRACTION	Local ncs	0.13583	0.0501
81	162	M	X-RAY DIFFRACTION	Local ncs	0.13583	0.0501
82	163	G	X-RAY DIFFRACTION	Local ncs	0.14014	0.0501
82	164	N	X-RAY DIFFRACTION	Local ncs	0.14014	0.0501
83	165	G	X-RAY DIFFRACTION	Local ncs	0.12503	0.0501
83	166	O	X-RAY DIFFRACTION	Local ncs	0.12503	0.0501
84	167	G	X-RAY DIFFRACTION	Local ncs	0.15017	0.0501
84	168	P	X-RAY DIFFRACTION	Local ncs	0.15017	0.0501
85	169	H	X-RAY DIFFRACTION	Local ncs	0.14882	0.0501
85	170	I	X-RAY DIFFRACTION	Local ncs	0.14882	0.0501
86	171	H	X-RAY DIFFRACTION	Local ncs	0.14063	0.0501
86	172	J	X-RAY DIFFRACTION	Local ncs	0.14063	0.0501
87	173	H	X-RAY DIFFRACTION	Local ncs	0.15158	0.05009
87	174	K	X-RAY DIFFRACTION	Local ncs	0.15158	0.05009
88	175	H	X-RAY DIFFRACTION	Local ncs	0.12833	0.0501
88	176	L	X-RAY DIFFRACTION	Local ncs	0.12833	0.0501
89	177	H	X-RAY DIFFRACTION	Local ncs	0.14645	0.0501
89	178	M	X-RAY DIFFRACTION	Local ncs	0.14645	0.0501
90	179	H	X-RAY DIFFRACTION	Local ncs	0.12354	0.0501
90	180	N	X-RAY DIFFRACTION	Local ncs	0.12354	0.0501
91	181	H	X-RAY DIFFRACTION	Local ncs	0.13989	0.0501
91	182	O	X-RAY DIFFRACTION	Local ncs	0.13989	0.0501
92	183	H	X-RAY DIFFRACTION	Local ncs	0.14067	0.0501
92	184	P	X-RAY DIFFRACTION	Local ncs	0.14067	0.0501
93	185	I	X-RAY DIFFRACTION	Local ncs	0.14968	0.05009
93	186	J	X-RAY DIFFRACTION	Local ncs	0.14968	0.05009
94	187	I	X-RAY DIFFRACTION	Local ncs	0.12619	0.0501
94	188	K	X-RAY DIFFRACTION	Local ncs	0.12619	0.0501
95	189	I	X-RAY DIFFRACTION	Local ncs	0.1522	0.0501
95	190	L	X-RAY DIFFRACTION	Local ncs	0.1522	0.0501
96	191	I	X-RAY DIFFRACTION	Local ncs	0.1357	0.0501
96	192	M	X-RAY DIFFRACTION	Local ncs	0.1357	0.0501
97	193	I	X-RAY DIFFRACTION	Local ncs	0.14477	0.0501
97	194	N	X-RAY DIFFRACTION	Local ncs	0.14477	0.0501
98	195	I	X-RAY DIFFRACTION	Local ncs	0.13218	0.0501
98	196	O	X-RAY DIFFRACTION	Local ncs	0.13218	0.0501
99	197	I	X-RAY DIFFRACTION	Local ncs	0.15676	0.05009
99	198	P	X-RAY DIFFRACTION	Local ncs	0.15676	0.05009
100	199	J	X-RAY DIFFRACTION	Local ncs	0.14385	0.0501
100	200	K	X-RAY DIFFRACTION	Local ncs	0.14385	0.0501
101	201	J	X-RAY DIFFRACTION	Local ncs	0.13105	0.0501
101	202	L	X-RAY DIFFRACTION	Local ncs	0.13105	0.0501
102	203	J	X-RAY DIFFRACTION	Local ncs	0.14961	0.05009
102	204	M	X-RAY DIFFRACTION	Local ncs	0.14961	0.05009
103	205	J	X-RAY DIFFRACTION	Local ncs	0.13437	0.0501
103	206	N	X-RAY DIFFRACTION	Local ncs	0.13437	0.0501
104	207	J	X-RAY DIFFRACTION	Local ncs	0.15348	0.05009
104	208	O	X-RAY DIFFRACTION	Local ncs	0.15348	0.05009
105	209	J	X-RAY DIFFRACTION	Local ncs	0.15015	0.05009
105	210	P	X-RAY DIFFRACTION	Local ncs	0.15015	0.05009
106	211	K	X-RAY DIFFRACTION	Local ncs	0.15183	0.0501
106	212	L	X-RAY DIFFRACTION	Local ncs	0.15183	0.0501
107	213	K	X-RAY DIFFRACTION	Local ncs	0.14421	0.0501
107	214	M	X-RAY DIFFRACTION	Local ncs	0.14421	0.0501
108	215	K	X-RAY DIFFRACTION	Local ncs	0.14913	0.05009
108	216	N	X-RAY DIFFRACTION	Local ncs	0.14913	0.05009
109	217	K	X-RAY DIFFRACTION	Local ncs	0.13691	0.0501
109	218	O	X-RAY DIFFRACTION	Local ncs	0.13691	0.0501
110	219	K	X-RAY DIFFRACTION	Local ncs	0.15878	0.05009
110	220	P	X-RAY DIFFRACTION	Local ncs	0.15878	0.05009
111	221	L	X-RAY DIFFRACTION	Local ncs	0.1564	0.0501
111	222	M	X-RAY DIFFRACTION	Local ncs	0.1564	0.0501
112	223	L	X-RAY DIFFRACTION	Local ncs	0.12638	0.0501
112	224	N	X-RAY DIFFRACTION	Local ncs	0.12638	0.0501
113	225	L	X-RAY DIFFRACTION	Local ncs	0.14878	0.0501
113	226	O	X-RAY DIFFRACTION	Local ncs	0.14878	0.0501
114	227	L	X-RAY DIFFRACTION	Local ncs	0.13779	0.0501
114	228	P	X-RAY DIFFRACTION	Local ncs	0.13779	0.0501
115	229	M	X-RAY DIFFRACTION	Local ncs	0.15101	0.05009
115	230	N	X-RAY DIFFRACTION	Local ncs	0.15101	0.05009
116	231	M	X-RAY DIFFRACTION	Local ncs	0.13834	0.0501
116	232	O	X-RAY DIFFRACTION	Local ncs	0.13834	0.0501
117	233	M	X-RAY DIFFRACTION	Local ncs	0.15513	0.05009
117	234	P	X-RAY DIFFRACTION	Local ncs	0.15513	0.05009
118	235	N	X-RAY DIFFRACTION	Local ncs	0.14343	0.0501
118	236	O	X-RAY DIFFRACTION	Local ncs	0.14343	0.0501
119	237	N	X-RAY DIFFRACTION	Local ncs	0.13762	0.0501
119	238	P	X-RAY DIFFRACTION	Local ncs	0.13762	0.0501
120	239	O	X-RAY DIFFRACTION	Local ncs	0.15747	0.05009
120	240	P	X-RAY DIFFRACTION	Local ncs	0.15747	0.05009

LS精密化シェル

解像度 (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.639-2.707	0.288	424	0.186	8603	X-RAY DIFFRACTION	91.8031
2.707-2.782	0.286	323	0.193	8997	X-RAY DIFFRACTION	95.8256
2.782-2.862	0.304	471	0.186	8549	X-RAY DIFFRACTION	95.9574
2.862-2.95	0.234	481	0.164	8475	X-RAY DIFFRACTION	98.1695
2.95-3.047	0.25	460	0.183	8171	X-RAY DIFFRACTION	98.2694
3.047-3.154	0.32	453	0.201	7987	X-RAY DIFFRACTION	98.3683
3.154-3.273	0.3	432	0.186	7703	X-RAY DIFFRACTION	98.3795
3.273-3.406	0.259	353	0.194	7412	X-RAY DIFFRACTION	98.5406
3.406-3.558	0.23	376	0.178	7137	X-RAY DIFFRACTION	98.9464
3.558-3.731	0.203	444	0.179	6794	X-RAY DIFFRACTION	99.5461
3.731-3.933	0.268	397	0.187	6454	X-RAY DIFFRACTION	99.2899
3.933-4.172	0.203	272	0.188	6183	X-RAY DIFFRACTION	99.0031
4.172-4.459	0.2	228	0.156	5940	X-RAY DIFFRACTION	99.6124
4.459-4.816	0.196	223	0.147	5450	X-RAY DIFFRACTION	99.4565
4.816-5.275	0.178	261	0.16	5012	X-RAY DIFFRACTION	99.7163
5.275-5.897	0.245	284	0.189	4419	X-RAY DIFFRACTION	99.4082
5.897-6.808	0.274	163	0.205	4032	X-RAY DIFFRACTION	99.6674
6.808-8.334	0.156	204	0.161	3323	X-RAY DIFFRACTION	99.6891

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

すべてのお知らせ

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

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万見について

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お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)

-ムービー

-構造ビューア

+ビューアのログ

-このページ

-このウェブサイト

-オプション

+データを開く

-基本情報

-構造の表示

-ダウンロードとリンク

-ダウンロード

-検証レポート

-関連構造データ

-リンク

-集合体

-要素

-実験情報

-実験

-試料調製

-データ収集

-解析

+万見について

-お知らせ

-2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-2020年8月12日: 新型コロナ情報

+2020年3月5日: 新型コロナウイルスの構造データ

+2019年1月31日: EMDBのIDの桁数の変更

+2017年7月12日: PDB大規模アップデート

-万見 (Yorodumi)

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)