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- PDB-8gm2: Crystal structure of T252E-CYP199A4 in complex with 4-methoxybenz... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8gm2 | ||||||
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Title | Crystal structure of T252E-CYP199A4 in complex with 4-methoxybenzoic acid soaked with 2 mM hydrogen peroxide | ||||||
![]() | Cytochrome P450 | ||||||
![]() | OXIDOREDUCTASE / cytochrome / bacterial P450 | ||||||
Function / homology | ![]() cholest-4-en-3-one 26-monooxygenase activity / steroid hydroxylase activity / cholesterol catabolic process / iron ion binding / heme binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lee, J.H.Z. / Bruning, J.B. / Bell, S.G. | ||||||
Funding support | ![]()
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![]() | ![]() Title: An In Crystallo Reaction with an Engineered Cytochrome P450 Peroxygenase. Authors: Lee, J.H.Z. / Bruning, J.B. / Bell, S.G. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 93.4 KB | Display | ![]() |
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PDB format | ![]() | 67.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 16.6 KB | Display | |
Data in CIF | ![]() | 22.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8glyC ![]() 8glzC ![]() 8gm1C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 44601.410 Da / Num. of mol.: 1 / Mutation: T252E Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: RPB_3613 / Production host: ![]() ![]() |
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#2: Chemical | ChemComp-ANN / |
#3: Chemical | ChemComp-HEM / |
#4: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 41.42 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop / pH: 7.4 Details: 0.2 M magnesium acetate, 100 mM Bis-Tris buffer (adjusted with acetic acid to pH 5.0-5.75) and 20 - 32 % PEG 3350 PH range: 5.0 - 5.75 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210r / Detector: CCD / Date: Oct 10, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9537 Å / Relative weight: 1 |
Reflection | Resolution: 2.33→44.34 Å / Num. obs: 15455 / % possible obs: 99.8 % / Redundancy: 6.5 % / CC1/2: 0.995 / Rmerge(I) obs: 0.136 / Rpim(I) all: 0.058 / Rrim(I) all: 0.148 / Χ2: 0.95 / Net I/σ(I): 11.9 / Num. measured all: 99887 |
Reflection shell | Resolution: 2.33→2.41 Å / % possible obs: 99.6 % / Redundancy: 6.4 % / Rmerge(I) obs: 0.814 / Num. measured all: 9512 / Num. unique obs: 1489 / CC1/2: 0.893 / Rpim(I) all: 0.35 / Rrim(I) all: 0.888 / Χ2: 0.98 / Net I/σ(I) obs: 3 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.33→44.34 Å
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Refine LS restraints |
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LS refinement shell |
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