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- PDB-8dil: Crystal structure of putative nitroreductase from Salmonella enterica -

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Basic information

Entry
Database: PDB / ID: 8dil
TitleCrystal structure of putative nitroreductase from Salmonella enterica
ComponentsPutative NAD(P)H nitroreductase
KeywordsOXIDOREDUCTASE / nitroreductase / structural genomics / CSGID / Center for Structural Genomics of Infectious Diseases
Function / homology
Function and homology information


Oxidoreductases / oxidoreductase activity
Similarity search - Function
Putative NAD(P)H nitroreductase YdjA-like / Nitroreductase / Nitroreductase family / Nitroreductase-like
Similarity search - Domain/homology
CITRIC ACID / FLAVIN MONONUCLEOTIDE / DI(HYDROXYETHYL)ETHER / TRIETHYLENE GLYCOL / Putative NAD(P)H nitroreductase
Similarity search - Component
Biological speciesSalmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.8 Å
AuthorsChang, C. / Skarina, T. / Mesa, N. / Joachimiak, A. / Center for Structural Genomics of Infectious Diseases (CSGID)
Funding support1items
OrganizationGrant numberCountry
Not funded
CitationJournal: to be published
Title: Crystal structure of putative nitroreductase from Salmonella enterica
Authors: Chang, C. / Skarina, T. / Mesa, N. / Joachimiak, A.
History
DepositionJun 29, 2022Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jul 13, 2022Provider: repository / Type: Initial release
Revision 1.1Oct 18, 2023Group: Data collection / Refinement description
Category: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Putative NAD(P)H nitroreductase
B: Putative NAD(P)H nitroreductase
C: Putative NAD(P)H nitroreductase
D: Putative NAD(P)H nitroreductase
E: Putative NAD(P)H nitroreductase
F: Putative NAD(P)H nitroreductase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)126,89439
Polymers120,9076
Non-polymers5,98733
Water15,745874
1
A: Putative NAD(P)H nitroreductase
B: Putative NAD(P)H nitroreductase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)42,10412
Polymers40,3022
Non-polymers1,80210
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area9200 Å2
ΔGint-39 kcal/mol
Surface area14710 Å2
MethodPISA
2
C: Putative NAD(P)H nitroreductase
D: Putative NAD(P)H nitroreductase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)42,40414
Polymers40,3022
Non-polymers2,10212
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area9420 Å2
ΔGint-38 kcal/mol
Surface area14980 Å2
MethodPISA
3
E: Putative NAD(P)H nitroreductase
F: Putative NAD(P)H nitroreductase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)42,38613
Polymers40,3022
Non-polymers2,08411
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area9770 Å2
ΔGint-40 kcal/mol
Surface area14950 Å2
MethodPISA
Unit cell
Length a, b, c (Å)42.588, 72.719, 172.854
Angle α, β, γ (deg.)90.000, 93.940, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb

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Components

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Protein , 1 types, 6 molecules ABCDEF

#1: Protein
Putative NAD(P)H nitroreductase


Mass: 20151.158 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (bacteria)
Strain: SL1344
Gene: ydjA, SL1344_1231, G1W50_15780, G1W53_02785, G1W54_02785, G1W56_06140, G1W59_21080, G1W62_10980, G1W63_02785, G1W64_08545, G1W67_10975, G1W72_21920, G1W73_21040, G1W84_21635, G1W85_21645, G1W86_ ...Gene: ydjA, SL1344_1231, G1W50_15780, G1W53_02785, G1W54_02785, G1W56_06140, G1W59_21080, G1W62_10980, G1W63_02785, G1W64_08545, G1W67_10975, G1W72_21920, G1W73_21040, G1W84_21635, G1W85_21645, G1W86_02465, G1W87_16195, G1W89_05570, G1W92_14510, G1X00_22250, G1X03_02785, G1X04_04115, G1X09_05880, G1X10_02785, G1X11_22300, G1X12_22270, G1X13_05880, G1X15_08330, G1X17_05880, G1X18_22295, G1X19_16140, G1X23_02770, G1X29_05880, G1X31_22115, G1X32_05465, G1X38_02785, G1X42_14510, G1X44_10725, G1X46_21425, G1X47_05450, G1X49_02785, G1X50_08005, G1X51_05880, G1X52_08550, G1X57_14905, G1X61_10985, G1X64_10730, G1X66_02785, G1X67_10730, G1X68_02785, G1X69_06145, G1X71_05885, G1X76_02785, G1X80_02785, G1X84_05470, G1X85_02785, G1X86_16255, G1X87_08025, G1X94_05450, G1X96_16260, G1X98_22215, G1X99_08560, G1Y02_05470, G1Y04_10720, G1Y11_08890
Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: A0A0H3NAL3, Oxidoreductases

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Non-polymers , 6 types, 907 molecules

#2: Chemical
ChemComp-FMN / FLAVIN MONONUCLEOTIDE / RIBOFLAVIN MONOPHOSPHATE


Mass: 456.344 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: C17H21N4O9P
#3: Chemical
ChemComp-CIT / CITRIC ACID


Mass: 192.124 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: C6H8O7
#4: Chemical
ChemComp-PGE / TRIETHYLENE GLYCOL


Mass: 150.173 Da / Num. of mol.: 5 / Source method: obtained synthetically / Formula: C6H14O4
#5: Chemical
ChemComp-EDO / 1,2-ETHANEDIOL / ETHYLENE GLYCOL


Mass: 62.068 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C2H6O2
#6: Chemical
ChemComp-PEG / DI(HYDROXYETHYL)ETHER


Mass: 106.120 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C4H10O3
#7: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 874 / Source method: isolated from a natural source / Formula: H2O

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Details

Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.21 Å3/Da / Density % sol: 44.31 %
Crystal growTemperature: 289 K / Method: vapor diffusion, hanging drop / Details: 20% PEG3350, 0.2M Lithium Citrate

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 0.97926 Å
DetectorType: DECTRIS PILATUS3 X 6M / Detector: PIXEL / Date: Aug 19, 2019
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97926 Å / Relative weight: 1
ReflectionResolution: 1.8→50 Å / Num. obs: 95785 / % possible obs: 98.3 % / Redundancy: 6 % / Biso Wilson estimate: 19.51 Å2 / Rmerge(I) obs: 0.128 / Rpim(I) all: 0.055 / Rrim(I) all: 0.14 / Χ2: 0.981 / Net I/σ(I): 5 / Num. measured all: 571955
Reflection shell

Diffraction-ID: 1

Resolution (Å)Redundancy (%)Rmerge(I) obsNum. unique obsCC1/2Rpim(I) allRrim(I) allΧ2% possible all
1.8-1.834.30.64346270.7890.3220.7230.92694.2
1.83-1.864.60.52546550.910.2560.5870.94296.2
1.86-1.94.80.54646790.8570.2640.6090.94697.5
1.9-1.944.70.48146000.8830.2350.5380.9895.2
1.94-1.985.40.42147590.9370.1930.4650.96598.7
1.98-2.035.90.37449060.980.1670.4111.0199.7
2.03-2.0860.3347860.9750.1460.3620.99199.6
2.08-2.136.10.30748520.9720.1350.3361.02299.4
2.13-2.26.10.2848110.9740.1220.3071.02999.3
2.2-2.276.20.23847770.9840.1030.261.03598.4
2.27-2.355.80.22246950.9820.0990.2441.04996.4
2.35-2.446.50.19547920.9910.0820.2121.04199.4
2.44-2.556.60.17848470.990.0750.1931.04299.8
2.55-2.696.60.15548660.990.0650.1681.06599.7
2.69-2.866.50.12948380.9950.0540.141.02799.2
2.86-3.086.10.10647440.9930.0460.1161.00397.3
3.08-3.396.90.09448740.9960.0380.1010.982100
3.39-3.886.80.0848890.9960.0330.0870.9199.3
3.88-4.886.40.07348250.9970.030.0790.83398.1
4.88-506.70.07349630.9950.030.0790.80198.8

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Processing

Software
NameVersionClassification
SBC-Collectdata collection
PHENIX1.20.1_4487refinement
HKL-3000data scaling
PDB_EXTRACT3.27data extraction
HKL-3000data reduction
HKL-3000phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 3BM1
Resolution: 1.8→45.09 Å / SU ML: 0.2265 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 30.0166
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
RfactorNum. reflection% reflection
Rfree0.2741 4370 4.75 %
Rwork0.2281 87652 -
obs0.2302 92022 93.8 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso mean: 26.34 Å2
Refinement stepCycle: LAST / Resolution: 1.8→45.09 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms8099 0 402 874 9375
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00298731
X-RAY DIFFRACTIONf_angle_d0.561111784
X-RAY DIFFRACTIONf_chiral_restr0.04421224
X-RAY DIFFRACTIONf_plane_restr0.00521533
X-RAY DIFFRACTIONf_dihedral_angle_d21.18563281
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
1.8-1.820.3882750.31021639X-RAY DIFFRACTION52.42
1.82-1.840.33151050.28772206X-RAY DIFFRACTION70.5
1.84-1.860.29811300.26692424X-RAY DIFFRACTION78.3
1.86-1.890.34351120.26672635X-RAY DIFFRACTION85.79
1.89-1.910.26841220.27452802X-RAY DIFFRACTION89.36
1.91-1.940.29981530.25792803X-RAY DIFFRACTION89.66
1.94-1.960.29251650.25122910X-RAY DIFFRACTION94.64
1.96-1.990.29681430.24062977X-RAY DIFFRACTION97.87
1.99-2.020.28281430.2393079X-RAY DIFFRACTION97.93
2.02-2.060.33481280.24333050X-RAY DIFFRACTION98.09
2.06-2.090.23671500.23973013X-RAY DIFFRACTION98.11
2.09-2.130.28881580.24013134X-RAY DIFFRACTION98.15
2.13-2.170.23771460.22932957X-RAY DIFFRACTION98.41
2.17-2.220.28441780.22553061X-RAY DIFFRACTION97.85
2.22-2.260.2571610.22632987X-RAY DIFFRACTION96.77
2.26-2.320.27721430.2222973X-RAY DIFFRACTION96.74
2.32-2.380.27641640.22253005X-RAY DIFFRACTION95.74
2.38-2.440.27031510.21953054X-RAY DIFFRACTION99.04
2.44-2.510.29941850.22553062X-RAY DIFFRACTION98.51
2.51-2.590.29811620.23113024X-RAY DIFFRACTION99.04
2.59-2.680.28031610.23813092X-RAY DIFFRACTION98.73
2.69-2.790.31671670.24543078X-RAY DIFFRACTION98.45
2.79-2.920.28691570.22663040X-RAY DIFFRACTION98.37
2.92-3.070.26961500.21873008X-RAY DIFFRACTION96.19
3.07-3.270.26831520.22793103X-RAY DIFFRACTION99.15
3.27-3.520.28111550.21923097X-RAY DIFFRACTION99.03
3.52-3.870.231090.2053164X-RAY DIFFRACTION99.15
3.87-4.430.24451480.19883030X-RAY DIFFRACTION97.16
4.43-5.580.25121600.21373132X-RAY DIFFRACTION99.01
5.58-45.090.25251370.24413113X-RAY DIFFRACTION95.79
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.00185027755189-0.002113785137370.003695785249760.0047209899586-0.001796310228230.0227626207936-0.026630464601-0.004338746150630.004720981337540.00662815771513-0.003486286780720.001765666713520.0117962795973-0.00540967496694-0.02149336587190.05527245406780.02565383284960.05628856150390.200207967407-0.04798431344850.284085041053-12.92901867631.70422452896-48.9816804175
20.00265927852680.00324122958440.002133109149930.003992766039040.002441070159960.00163541029820.01227127044980.04162785600280.0259549209284-0.0316294759716-0.02703608524580.021067345055-0.0132716154638-0.0185942324103-0.001289344870080.1091524618650.0254349531665-0.006383691309580.124177523160.01807664772060.225936042349-10.08588704740.646898741808-66.0914148325
30.009068905397750.00321505411799-0.004511370101120.00213610877093-0.001501992073590.002324446018820.0107399731220.003427248197840.0106947675306-0.007521561516960.006981569650340.0115336569041-0.0190882217412-0.002587615444670.01390738067940.1027260156310.1025437286360.05076165746940.03252668425420.04108990480.249825343254-1.9207300616512.4633527342-59.4283587093
40.001436524802480.001129048199627.88195390317E-50.0005608629116410.0005524676965510.00477685168208-0.013456403164-0.01325508078910.00917671985237-0.018720666658-0.0147946361698-0.00736283705122-0.0001619507979430.00942661860047-0.0008736322962120.08922706902540.0124019376432-0.02787902726410.134098142176-0.01639758358830.18649706240311.68250099857.94947720645-50.1694142887
50.01158164213360.0112509517938-0.01112678513330.0107361830723-0.01366864599190.0180833247382-0.02662626761390.07706775578440.0682775744246-0.067720847356-0.0135683713936-0.00400096651395-0.02625482473920.0305960757057-0.0096941963540.1019421636440.03685175461950.006594247169530.128494539710.02849674076990.1542506244525.924107329611.70021188626-74.416499215
60.004990939036220.00180426898558-0.002038330064240.0146618240975-0.01311138076940.01129742653770.057759218910.04455946625-0.0171025242820.0008853242429010.0074447445890.01679680906190.0134761019460.01106257887690.004732114453580.1572679827850.043512649073-0.03424812189430.151276546936-0.04105473150420.1393037709411.98564480661-10.3566432728-78.7165524824
70.0473666350639-0.004167775352330.0007177993460730.0426315616267-0.009655769684370.04054936365260.0213502312757-0.04924099415840.0035886355617-0.033844678012-0.0147736226094-0.0540465402781-0.01049624585280.08906107054880.0571236249185-0.003672854512560.0677513101258-0.08892113413470.142383868147-0.02074891523580.1447169824712.27799129113.10774551774-59.1430473968
80.0202753392927-0.01465049179950.03237412069120.09255853673110.04174691790340.156256850655-0.03393289519920.02265349324730.0700699746222-0.0434466227696-0.0723220776402-0.01715263724430.01973223980060.065378645657-0.160819018264-0.0435346769550.132344903250.02181531408880.0626144722581-0.003314614224040.09263065480945.7117302678-0.556090847362-62.2008365829
90.00714926210113-0.00699022271677-0.006895205163360.007940121129530.008255494492070.00668205874203-0.0215656276251-0.03637844992550.02170458904650.00248252174395-0.0551692263230.09952462598750.0141694268915-0.01604378753582.1848884715E-50.1765024457960.0325887886129-0.02573213674760.282428668376-0.001792184509990.218769674913-7.05311960131-10.5426042252-46.0892192797
100.0332991469470.00227772088238-0.009450007121860.02721235070040.01027186895770.03106928827310.0167246918897-0.08116586695870.1517272149040.0841017892137-0.05733414461090.0819213949085-0.0302684395535-0.041976842257-0.01385586348030.1179734917710.04946530792220.02693961248550.182231711517-0.0962548886550.191714236572-3.565295317138.54781192411-40.9448154544
110.002183321797950.00252890190174-0.0004185713835170.005536276334410.001043256818060.003094256219940.0167301671175-0.0220242313188-0.002419150527860.0224329247371-0.01586668768070.03388590701330.00421263986837-0.02122694251290.001629948656150.09051184806610.02189082754160.05673218772960.1806533283160.01033635390040.213373333213-8.89682379323-5.44150265834-42.6713868876
120.004623016532160.000914414879258-0.002224411868220.00827033720705-0.004961045207310.002799838183560.0134560574124-0.0630327763157-0.0402503385163-0.0511780729405-0.04800605160590.05052928073860.0120377764991-0.00302571908611-4.77568096909E-60.1373301001320.001574610785960.01383244396490.13786191312-0.01205399173670.150333688952-0.194799587309-11.6159283937-46.8520573982
130.001397478288670.0009487007749610.001338221635380.001112894302250.00270745823930.00328329866654-0.00594728705383-0.0185351853964-0.007959302244820.0325828263425-0.0260332387612-0.02668710043570.02595244776150.006017076772090.001152103107740.177232730993-0.02825732842710.01092779120230.4825658459940.08014142893480.1506584304912.014445929-7.80736721749-27.7243591784
14-0.001505932227410.002505319358180.006314139471730.02353477009630.03520302942460.0337114004987-0.020449983209-0.1375336295390.01994246053570.0932970032927-0.0313580253676-0.0361431472523-0.0849122785670.0910518457618-0.04877627621430.178672699981-0.0714452706953-0.03370144613040.352242197132-0.06816291678070.043812881935512.9595407831-1.50191110963-30.8725329184
150.01028606697680.007729328968520.008876371592770.006130765094380.005352207635540.0120917692476-0.00217787836021-0.0043217334511-0.02832896428390.00193757550459-0.005954032228090.0035998759060.0186184953890.007749157244120.001860682364520.189020208580.1189556013460.01040654106290.116796981557-0.04448722104770.1344747150977.40087672225-18.4253630563-55.6276405807
160.2468535902920.124493330106-0.0509387255080.0795059022364-0.07055915635880.1562437770930.0683146599404-0.125101763576-0.02893282614660.0464380821288-0.159613880633-0.01899685343640.004749838910440.106764275431-0.1424790230830.09067315791510.05571934937980.01636688435270.1347345096690.006577587234050.1225460362356.46932689276-5.46624073943-43.1612197668
170.000728629517118-0.0005175657492770.00163809205551-0.00155303478032-0.001545100280920.00568697357043-0.01712310859340.01685255631760.155255714252-0.042073707909-0.02102883773670.0297797467885-0.02180600542010.0136519288301-0.000791218316040.1935025779070.03398194796530.02059340737750.1212519504830.02441837016520.2552645442764.6902276512712.753737468-57.9757674962
180.000757783903664-0.00231215346565-0.003658612222780.006859961507220.01049779637560.0158641266845-0.001608885016510.006406049934390.000146063397234-0.0125570171747-0.01749537405220.006763893635880.01777271254430.00207740717968-0.01410571173690.3610212621690.05850119662820.044114989120.03728502725640.01691871298060.22251212447717.3399285722-13.3256121164.9221045204
190.00152555244607-0.002349616985740.002549783642260.00388420049053-8.3034987472E-50.00248712598051-0.04434365367960.0355428131722-0.0142313611922-0.0588552482427-0.00685915221337-0.01624833626280.0348729389231-0.02375497652159.91973977469E-60.256619006223-0.011758162231-0.01315825330440.136889512773-0.03397201101180.16327210907612.5499256647-7.96671309942-10.8636824388
200.006712383156030.0002552343986240.01333448161370.01148447233870.01058280631570.0402761593344-0.01010780665810.0109870087167-0.01254807155930.006421019848130.004834435004120.01060770034140.0075215489637-0.0185431060370.000574010036180.308285805732-0.16194889548-0.02208976846650.1487407551260.007718496780980.2618763560470.339815129721-7.76502814249-0.586317266291
210.00824095405234-0.0101415395281-0.001421381343750.01474771715970.009713230660960.00738355249529-0.1245619218080.002942825828590.0744091848126-0.06866728877630.01567721521520.101983957589-0.0411315137014-0.07793608491382.18155429094E-50.2613032795650.0120359587806-0.05737452822930.2023968930670.008341961274890.1918534894281.999504216.3954878645-8.16702809
220.00424902633401-0.00878472325252-0.009171847225540.02194568557150.02149370657110.02148020199060.02077920458130.01313993110560.013971865828-0.007555171030940.0220545201009-0.00545033136774-0.07076533749480.01264768960780.02527043793820.438595353689-0.0864966902417-0.05930941411840.2811127713420.04808388613260.12814717084613.36279365229.36440206244-21.6731395372
230.002542870817360.00179906666279-0.009662367945330.0244807802949-0.001246042769130.0366466743543-0.0247723683675-0.005971815588610.0184362511981-0.01654220472370.06473685365870.01797844466880.00449658190658-0.03205445291260.04163889617310.3045428787020.0158273518636-0.04126963636260.106045378698-0.0896789245480.1070551255882.058916102688.854254964161.97311848192
240.05195069181060.0170250366281-0.00445300154980.008664871640780.01626143888480.128122613887-0.09073661044360.001042367697550.0497829934095-0.03624976985740.00393887013790.0412573617991-0.0526935902012-0.144444265882-0.06938523318990.2909638375280.0251230185532-0.04640825504850.056625082839-0.02082248896420.1177180846747.444295962825.64287968042-3.32404891088
25-0.000540108690931-0.000510173704989-0.0007621783135570.0179555889635-0.01243360697050.00730585366461-0.0903345339286-0.00197140205231-0.0504718408261-0.0865086213757-0.0227000035751-0.06093569158380.06162553401650.0164770191376-8.47521074432E-50.3574480998970.05195483449-0.03360178072370.184311723334-0.01849140356090.21973333641125.4567455013-1.129226365989.23666600909
260.01585910119680.00111702954751-0.05852499237490.1320950374220.01837128761060.222533293723-0.124404283765-0.0241843453195-0.122427502443-0.0106989104551-0.06311202411950.05741867132320.04518721454190.0279942794264-0.03084653704890.41089430242-0.0188946901870.08975498863970.1445266496820.0371585988220.229948278779.19676366723-9.9359393489316.0580289987
270.0313543959320.01017064536240.0002856906974180.0149333591675-0.02203680085920.0449458581578-0.0129004121058-0.0370172828699-0.02452644841370.03346088820770.0183598481026-0.01932881075330.02029173835730.0227836063770.002336891603790.3581430193660.09764991142380.01177051422790.08496572304960.004117435151650.21834655853323.2118591524-7.4479449488312.006280692
280.00660374614878-0.0075694805988-0.0007101134386720.006045104782450.000883772757452-0.000201254445108-0.0597560724425-0.05612301507510.00707332926756-0.04406657185650.0075490502684-0.0190935601218-0.004978830102040.0565319070034-3.33166289412E-60.213058274202-0.006389960698540.02071155549040.1615636287650.001904102970270.13386407686823.34567019883.941929133888.31747331709
290.08997796907840.0359768189272-0.004697271149210.0130758063676-0.003752433290760.00269156984139-0.0083445944731-0.1693597208270.103318000380.05945706824780.006729200585090.0284987628845-0.0341974643656-0.0178360913533-0.009473220886610.2562735831640.05975298120810.01067382051610.190640013012-0.03034325624530.10358919556615.05444464038.5860723351229.1029525794
300.0220442051514-0.00962552213222-0.007207958375760.0075131336015-0.005077121126280.0236123408851-0.00264036476136-0.01397847487770.00114963132923-0.0105185229757-0.00354374309276-0.00605828454254-0.01399739058050.01641645665790.00400790135790.373170577013-0.0946683421167-0.005246597846270.1235699936230.0761546933320.17591697770523.796226900414.95434673330.901477787577
310.0782579959283-0.0275445943859-0.0120216644620.01073924919890.006600435328430.0281346520555-0.0448460710819-0.1203823222010.120413138735-0.06450013422950.031089850020.008235340790230.0124911323161-0.00395665622076-0.01692180800260.248329749861-0.006570753732110.004088564808990.0798115861059-0.009042838245820.14152763028815.92877921665.9589480698714.3889907489
320.003333462080810.003330177079560.001350722229340.004480738776890.004281509521730.00315675383862-0.0988248295860.0291477211277-0.07016416500840.0187551263176-0.04044300524150.0778015901170.0279537598239-0.0144387709083-8.96045708768E-60.342000095243-0.09532541269830.006704069892430.271619257280.02127219018120.251660814602-2.55375019302-2.384098898172.24530684382
330.001931609139320.00431125163501-0.007829117641380.0103691782611-0.01903399572590.0352848737118-0.0221095907626-0.003666587393980.009094371078630.00425923085551-0.02942930494280.0114599833401-0.001588965388210.00428998747122-0.03326674262460.100523903489-0.0831385401003-0.02904705264310.09807247660410.02841259447550.23278385530930.321404601111.712700218261.8371488608
340.005841770794570.002375862819750.005132903775710.00299143003998-0.0004625771890740.00769406301636-0.07912346792230.0460709856834-0.0242920790408-0.0456217869164-0.0201736010033-0.0231951289034-0.0151744590002-0.0105655694524-0.01924306833080.220308841802-0.07161090473830.04152220698940.165454669210.01404191782950.16042677468923.70956098657.3792887637646.3728625555
350.0046607490942-0.00295308412553-0.004532587088860.00368975930095-0.00010874159610.008467060185620.002013511920830.0350479279671-0.00358737190274-0.02094406184880.00879736940416-0.02744454363340.0196576017040.03578654240970.001701415442270.128981445614-0.05838419610260.06664451937320.226918967022-0.04826313672710.24609415866331.6218292904-4.6771448422252.9982411308
360.00357490818637-0.00272811419398-0.0003293012447550.003790941901460.000167596171070.000195094338333-0.021499242973-0.000415447829935-0.006336041775740.0248562598384-0.0137729667593-0.005814568512960.01958703405490.0158603770377-0.0004241983158550.217179103142-0.0470203424870.04099576929070.108901729072-0.003911074569180.19758715689723.7613831026-12.556647616366.0502369701
370.0792206372763-0.01373977628890.01966723519190.17720954078-0.06560330103060.0283287628207-0.01689385435150.111242412292-0.04998563069460.0395267380905-0.100512712287-0.02201312917340.00210503219473-0.0658583490719-0.0622092712410.127613505641-0.08068062295150.05378567024710.209760296435-0.07028399109870.11591967001514.3334457935-7.6491416676942.8125807205
38-0.0012728430598-0.002980938294730.004674038950390.00791853662939-0.002434589190790.00680050547878-0.03994439721430.136585821143-0.00181864068031-7.21162079702E-5-0.04478219580760.03977709719020.000441163946592-0.0485598242762-0.030894479150.164325722379-0.06826885495950.002630297090760.291325650031-0.005670274655240.096241323243710.1467695837-0.36256831762642.0943044443
390.007554690287740.00501717400601-0.001314374343730.007250526823130.0009361240038790.00113494532935-0.00475619568204-0.00629166104425-0.0179447403764-0.00125403731965-0.008689569650630.02108076659240.01545416115880.00810991186357-0.001159796353450.274794302688-0.1374337145130.0008134518706140.2154630514540.08735461141920.26688647774115.7876401715-17.61190452567.6862449581
400.06897967261340.0421562790289-0.01065421823090.0222005747935-0.01446601753820.0513029677452-0.0299992862195-0.0121279634851-0.05972525146540.0710260453615-0.08120979612830.0003723594315590.0981152907924-0.0687184269295-0.0550139906579-0.0427588155672-0.2001705993780.07583841906240.07207414497220.03004510865980.083678663314918.6345325585-1.25238282256.5143176422
410.02128642427470.004141262880090.01274715115280.001737158617540.003306229729170.00793936251949-0.007762811824290.0227078942385-0.03506234990260.0106283414167-0.03325153880540.01637658939950.0551371797856-0.0326678220131-0.04445174556860.188698086444-0.2443697668640.031594700760.213723530101-0.06252366188540.1211901058912.5080091883-9.9626780279551.029604494
420.006379632270490.0131103431925-0.000164339526350.0098798992649-0.0009076334474620.000252131581104-0.03228121880720.004113357780580.113376768883-0.00628796992405-0.0240558484265-0.0437134610121-0.0428712510974-0.01958931586894.38882499847E-50.158207970039-0.0202024326560.03532162134390.157913473803-0.006732715621550.23380438061318.002174626213.142877866469.5966609254
430.00122027498184-0.0003640923214450.007301840608980.01636155001330.01437636949050.0654320023408-0.0438355159298-0.0184676025010.02316795334280.000591807317417-0.02767965464730.00574105294853-0.00191761419540.0115230105343-0.01181547577970.0509095466004-0.01525983214620.03900045997530.1734826759760.02110117596710.22562788184435.68192050612.0013900895260.5314778603
440.0145920203520.00272273367563-0.001329673872230.0122317516969-0.01617920627420.022417972584-0.089314346066-0.0115265323113-0.03566366966530.0339947382666-0.0236078287574-0.0632903522170.000355615128579-0.00503972389527-0.02127236977810.0873424121345-0.0211032170129-0.02241309373030.1327204521230.009769186977680.222170080432.8164095650.7655821411477.5983348461
450.00307822240369-0.002418272666950.004165535692330.006592460990891.9056186484E-50.00511050499789-0.0206124685504-0.006036851904950.03412123568980.0145252581183-0.00605412466588-0.00455281458166-0.01635702968650.0193914535555-0.00213561131170.109495774658-0.0453704525372-0.01346453304980.0905956643964-0.002560532108590.18968244809124.440134663312.708661197370.1981727252
460.01362167041910.00452341002835-0.0001160055281050.0112574902793-0.005301961553120.001431695369970.015804448070.06868152195870.01480365359380.0491067147416-0.00503583845080.0533979633865-0.01774028341-0.03288217536830.004258226536530.0854290045455-0.0190496844271-0.01069399029360.1331478477150.02491024066680.16004334369413.64989843237.9912486867769.8338628922
470.00831914815585-0.00324978227973-0.00428195276050.00525227710866-0.001382419725830.0120080651945-0.0613514770881-0.0587049385156-0.04861911071140.0551264819323-0.02172640851240.0164692725665-0.0102102702358-0.0473942290379-0.01849675314140.0935503057238-0.009208205967640.02033627532980.1499812548730.04338659975850.11869044937116.7502301396-1.5414088330890.1983569804
480.00626718479341-0.0007578333582180.00323396196611-0.000519133463007-0.0005240977695890.00435089236866-0.0688709964152-0.0941532856471-0.06573516354210.06721867614540.02436160059210.004269787598120.00773256450670.0765094123275-0.0658964655520.0802290832681-0.00677736249317-0.01690373160340.1222546344260.03836339051080.10687326894720.7109832456-6.5426671367186.1556089321
490.02964908819890.00261848214594-0.01835630754760.01749752953752.22032720308E-50.0117246113851-3.33797188576E-5-0.01560109645860.0005350942699410.01351157936930.02056433396890.01969675424380.00133762167392-0.02637684090760.01702493207510.0603988560279-0.0274735329828-0.02928966830230.2485255709620.01230776321480.2248446257092.258375594763.8583158768464.1495681253
500.00269783782713-0.01285288467560.002202637077660.0708709981394-0.02933594127980.0195907064602-0.03856172681780.025516104316-0.003528594400130.00852755166507-0.004447917494890.02754348684290.0498054616144-0.0232710592014-0.04193699437770.0181161114855-0.04316021041490.009382535719090.04113931591230.01901964034650.10929580561320.5327154728-0.43336108385270.4456860821
510.0105678517756-0.00965621403653-0.001139309160540.02293632354440.00466737342670.000989604342113-0.0503587011198-0.0233556052981-0.02724954451760.031921083741-0.0329986160732-0.004484932099790.0174978222238-0.00739865055363-0.00374843436620.0928361127457-0.003309245916710.01407094525680.202328429265-0.01134847287210.1904993531186.315687071790.37157035787379.7058694803
520.00609101129209-0.006434613247860.001076459227470.00602750211129-1.2345087508E-50.00328114669734-0.004363381171560.009879604978670.009772960166010.008985680775160.00372755574901-0.0295448637652-0.0173549706467-0.008541192636-0.000197299022920.0706231363692-0.01096548866550.004178418089520.1253769017980.01270569651690.11053342924119.8519986941-1.2749794620476.5496339129
530.000881118716770.002146910203240.00256708480298-0.0001396629510080.001634928029360.00128469127256-0.07051084383550.0146949998936-0.0371064411545-0.0527874486718-0.0462546331233-0.1035735756260.0671951096730.0183517014772-1.69067165742E-50.206420003471-0.02076469642180.03440207984440.231479537279-0.03311870628650.23518155655229.1330811918-10.402114718755.7623046075
Refinement TLS group

Refine-ID: X-RAY DIFFRACTION

IDRefine TLS-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11chain 'A' and (resid 1 through 9 )AA1 - 91 - 9
22chain 'A' and (resid 10 through 23 )AA10 - 2310 - 23
33chain 'A' and (resid 24 through 35 )AA24 - 3524 - 35
44chain 'A' and (resid 36 through 44 )AA36 - 4436 - 44
55chain 'A' and (resid 45 through 68 )AA45 - 6845 - 68
66chain 'A' and (resid 69 through 85 )AA69 - 8569 - 85
77chain 'A' and (resid 86 through 103 )AA86 - 10386 - 103
88chain 'A' and (resid 104 through 161 )AA104 - 161104 - 161
99chain 'A' and (resid 162 through 183 )AA162 - 183162 - 175
1010chain 'B' and (resid 1 through 23 )BB1 - 231 - 23
1111chain 'B' and (resid 24 through 35 )BB24 - 3524 - 35
1212chain 'B' and (resid 36 through 51 )BB36 - 5136 - 51
1313chain 'B' and (resid 52 through 68 )BB52 - 6852 - 68
1414chain 'B' and (resid 69 through 94 )BB69 - 9469 - 94
1515chain 'B' and (resid 95 through 103 )BB95 - 10395 - 103
1616chain 'B' and (resid 104 through 161 )BB104 - 161104 - 161
1717chain 'B' and (resid 162 through 183 )BB162 - 183162 - 174
1818chain 'C' and (resid 1 through 9 )CC1 - 91 - 9
1919chain 'C' and (resid 10 through 23 )CC10 - 2310 - 23
2020chain 'C' and (resid 24 through 35 )CC24 - 3524 - 35
2121chain 'C' and (resid 36 through 69 )CC36 - 6936 - 69
2222chain 'C' and (resid 70 through 85 )CC70 - 8570 - 85
2323chain 'C' and (resid 86 through 103 )CC86 - 10386 - 103
2424chain 'C' and (resid 104 through 161 )CC104 - 161104 - 161
2525chain 'C' and (resid 162 through 183 )CC162 - 183162 - 172
2626chain 'D' and (resid 1 through 23 )DD1 - 231 - 23
2727chain 'D' and (resid 24 through 35 )DD24 - 3524 - 35
2828chain 'D' and (resid 36 through 51 )DD36 - 5136 - 51
2929chain 'D' and (resid 52 through 94 )DD52 - 9452 - 94
3030chain 'D' and (resid 95 through 103 )DD95 - 10395 - 103
3131chain 'D' and (resid 104 through 161 )DD104 - 161104 - 161
3232chain 'D' and (resid 162 through 183 )DD162 - 183162 - 174
3333chain 'E' and (resid 1 through 9 )EE1 - 91 - 9
3434chain 'E' and (resid 10 through 23 )EE10 - 2310 - 23
3535chain 'E' and (resid 24 through 35 )EE24 - 3524 - 35
3636chain 'E' and (resid 36 through 44 )EE36 - 4436 - 44
3737chain 'E' and (resid 45 through 69 )EE45 - 6945 - 69
3838chain 'E' and (resid 70 through 94 )EE70 - 9470 - 94
3939chain 'E' and (resid 95 through 103 )EE95 - 10395 - 103
4040chain 'E' and (resid 104 through 139 )EE104 - 139104 - 139
4141chain 'E' and (resid 140 through 161 )EE140 - 161140 - 161
4242chain 'E' and (resid 162 through 183 )EE162 - 183162 - 174
4343chain 'F' and (resid 1 through 9 )FF1 - 91 - 9
4444chain 'F' and (resid 10 through 23 )FF10 - 2310 - 23
4545chain 'F' and (resid 24 through 35 )FF24 - 3524 - 35
4646chain 'F' and (resid 36 through 51 )FF36 - 5136 - 51
4747chain 'F' and (resid 52 through 68 )FF52 - 6852 - 68
4848chain 'F' and (resid 69 through 94 )FF69 - 9469 - 94
4949chain 'F' and (resid 95 through 103 )FF95 - 10395 - 103
5050chain 'F' and (resid 104 through 139 )FF104 - 139104 - 139
5151chain 'F' and (resid 140 through 152 )FF140 - 152140 - 152
5252chain 'F' and (resid 153 through 161 )FF153 - 161153 - 161
5353chain 'F' and (resid 162 through 183 )FF162 - 183162 - 174

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