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Yorodumi- PDB-8cso: Crystal Structure of Orotidine 5'-phosphate decarboxylase from Kl... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8cso | ||||||
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| Title | Crystal Structure of Orotidine 5'-phosphate decarboxylase from Klebsiella pneumoniae in complex with Uridine-5'-monophosphate | ||||||
Components | Orotidine 5'-phosphate decarboxylase | ||||||
Keywords | LYASE / SSGCID / Klebsiella pneumoniae / Orotidine 5'-phosphate decarboxylase / decarboxylation / uridine-5'-monophosphate / pyrF / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease | ||||||
| Function / homology | Function and homology informationorotidine-5'-phosphate decarboxylase / orotidine-5'-phosphate decarboxylase activity / 'de novo' UMP biosynthetic process / 'de novo' pyrimidine nucleobase biosynthetic process / cytosol Similarity search - Function | ||||||
| Biological species | Klebsiella pneumoniae subsp. pneumoniae HS11286 (bacteria) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.6 Å | ||||||
Authors | Seattle Structural Genomics Center for Infectious Disease / Seattle Structural Genomics Center for Infectious Disease (SSGCID) | ||||||
| Funding support | United States, 1items
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Citation | Journal: to be publishedTitle: Crystal Structure of Orotidine 5'-phosphate decarboxylase from Klebsiella pneumoniae in complex with Guanosine-5'-monophosphate Authors: Abendroth, J. / Davies, D.R. / Lorimer, D.D. / Horanyi, P.S. / Edwards, T.E. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8cso.cif.gz | 972.9 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8cso.ent.gz | 671.8 KB | Display | PDB format |
| PDBx/mmJSON format | 8cso.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cs/8cso ftp://data.pdbj.org/pub/pdb/validation_reports/cs/8cso | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 1eixS S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Links
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Assembly
| Deposited unit | ![]()
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| 2 | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Klebsiella pneumoniae subsp. pneumoniae HS11286 (bacteria)
X-RAY DIFFRACTION
United States, 1items
Citation
PDBj







