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Yorodumi- PDB-8cob: Crystal structure of human PCNA in complex with ERCC6L2 PIP box p... -
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Basic information
| Entry | Database: PDB / ID: 8cob | ||||||
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| Title | Crystal structure of human PCNA in complex with ERCC6L2 PIP box peptide | ||||||
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Keywords | DNA BINDING PROTEIN / ERCC6L2 / RAD26L / HEBO / PCNA / CENTROMERE ASSOCIATED REPLICATION FACTOR | ||||||
| Function / homology | Function and homology informationpositive regulation of deoxyribonuclease activity / dinucleotide insertion or deletion binding / PCNA-p21 complex / mitotic telomere maintenance via semi-conservative replication / purine-specific mismatch base pair DNA N-glycosylase activity / nuclear lamina / positive regulation of DNA-directed DNA polymerase activity / Polymerase switching / MutLalpha complex binding / Telomere C-strand (Lagging Strand) Synthesis ...positive regulation of deoxyribonuclease activity / dinucleotide insertion or deletion binding / PCNA-p21 complex / mitotic telomere maintenance via semi-conservative replication / purine-specific mismatch base pair DNA N-glycosylase activity / nuclear lamina / positive regulation of DNA-directed DNA polymerase activity / Polymerase switching / MutLalpha complex binding / Telomere C-strand (Lagging Strand) Synthesis / Processive synthesis on the lagging strand / PCNA complex / Removal of the Flap Intermediate / Processive synthesis on the C-strand of the telomere / Polymerase switching on the C-strand of the telomere / Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) / Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) / Transcription of E2F targets under negative control by DREAM complex / Removal of the Flap Intermediate from the C-strand / replisome / response to L-glutamate / response to dexamethasone / histone acetyltransferase binding / DNA polymerase processivity factor activity / leading strand elongation / G1/S-Specific Transcription / nuclear replication fork / replication fork processing / SUMOylation of DNA replication proteins / PCNA-Dependent Long Patch Base Excision Repair / response to cadmium ion / translesion synthesis / estrous cycle / mismatch repair / cyclin-dependent protein kinase holoenzyme complex / base-excision repair, gap-filling / DNA polymerase binding / liver regeneration / epithelial cell differentiation / positive regulation of DNA repair / TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest / Translesion synthesis by REV1 / Translesion synthesis by POLK / Translesion synthesis by POLI / positive regulation of DNA replication / Gap-filling DNA repair synthesis and ligation in GG-NER / replication fork / nuclear estrogen receptor binding / male germ cell nucleus / Termination of translesion DNA synthesis / Recognition of DNA damage by PCNA-containing replication complex / Translesion Synthesis by POLH / receptor tyrosine kinase binding / HDR through Homologous Recombination (HRR) / Dual Incision in GG-NER / cellular response to xenobiotic stimulus / cellular response to hydrogen peroxide / Dual incision in TC-NER / Gap-filling DNA repair synthesis and ligation in TC-NER / cellular response to UV / response to estradiol / E3 ubiquitin ligases ubiquitinate target proteins / heart development / chromatin organization / damaged DNA binding / chromosome, telomeric region / nuclear body / centrosome / chromatin binding / chromatin / protein-containing complex binding / enzyme binding / negative regulation of transcription by RNA polymerase II / extracellular exosome / nucleoplasm / identical protein binding / nucleus Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.73 Å | ||||||
Authors | Ariza, A. | ||||||
| Funding support | United Kingdom, 1items
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Citation | Journal: Cell Rep / Year: 2023Title: ERCC6L2 mitigates replication stress and promotes centromere stability. Authors: Carnie, C.J. / Armstrong, L. / Sebesta, M. / Ariza, A. / Wang, X. / Graham, E. / Zhu, K. / Ahel, D. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8cob.cif.gz | 390.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8cob.ent.gz | 269.4 KB | Display | PDB format |
| PDBx/mmJSON format | 8cob.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8cob_validation.pdf.gz | 460.6 KB | Display | wwPDB validaton report |
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| Full document | 8cob_full_validation.pdf.gz | 468.9 KB | Display | |
| Data in XML | 8cob_validation.xml.gz | 29.6 KB | Display | |
| Data in CIF | 8cob_validation.cif.gz | 40.3 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/co/8cob ftp://data.pdbj.org/pub/pdb/validation_reports/co/8cob | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 5mloS S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
United Kingdom, 1items
Citation
PDBj















