登録情報 | データベース: PDB / ID: 8bx1 |
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タイトル | Oct4/Sox2 protein:DNA complex |
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要素 | - HOXB1_f
- HOXB1_r
- POU domain, class 5, transcription factor 1
- Transcription factor SOX-2
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キーワード | TRANSCRIPTION / Oct4 / Sox2 / Hoxb1 |
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機能・相同性 | 機能・相同性情報
diencephalon morphogenesis / olfactory placode formation / lens induction in camera-type eye / ectodermal cell fate commitment / response to benzoic acid / retina morphogenesis in camera-type eye / regulation of myofibroblast cell apoptotic process / mesodermal cell fate commitment / HMG box domain binding / detection of mechanical stimulus involved in equilibrioception ...diencephalon morphogenesis / olfactory placode formation / lens induction in camera-type eye / ectodermal cell fate commitment / response to benzoic acid / retina morphogenesis in camera-type eye / regulation of myofibroblast cell apoptotic process / mesodermal cell fate commitment / HMG box domain binding / detection of mechanical stimulus involved in equilibrioception / pigment biosynthetic process / trophectodermal cell fate commitment / forebrain neuron differentiation / anatomical structure formation involved in morphogenesis / blastocyst growth / adenohypophysis development / positive regulation of epithelial cell differentiation / regulation of asymmetric cell division / response to oxygen-glucose deprivation / endodermal cell fate specification / Deactivation of the beta-catenin transactivating complex / endodermal cell fate commitment / germ-line stem cell population maintenance / positive regulation of cell-cell adhesion / POU domain binding / detection of mechanical stimulus involved in sensory perception of sound / negative regulation of calcium ion-dependent exocytosis / neuron fate commitment / trophectodermal cell differentiation / neuronal stem cell population maintenance / male genitalia development / female germ cell nucleus / cell fate specification / germ cell nucleus / tongue development / epithelial tube branching involved in lung morphogenesis / inner ear morphogenesis / RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding / stem cell population maintenance / positive regulation of neuroblast proliferation / lung alveolus development / positive regulation of Notch signaling pathway / negative regulation of Wnt signaling pathway / cytokine binding / somatic stem cell population maintenance / negative regulation of cell differentiation / inner ear development / blastocyst development / negative regulation of neuron differentiation / regulation of neurogenesis / neuroblast proliferation / positive regulation of transcription initiation by RNA polymerase II / negative regulation of osteoblast differentiation / cell fate commitment / embryonic organ development / cis-regulatory region sequence-specific DNA binding / response to retinoic acid / forebrain development / Notch signaling pathway / cellular response to cadmium ion / transcription repressor complex / positive regulation of neuron differentiation / : / male germ cell nucleus / cellular response to leukemia inhibitory factor / stem cell differentiation / positive regulation of cell differentiation / sensory perception of sound / lysine-acetylated histone binding / negative regulation of canonical Wnt signaling pathway / neuron differentiation / brain development / chromatin DNA binding / cerebral cortex development / Wnt signaling pathway / osteoblast differentiation / gene expression / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / RNA polymerase II-specific DNA-binding transcription factor binding / transcription regulator complex / sequence-specific DNA binding / transcription by RNA polymerase II / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of gene expression / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / chromatin binding / positive regulation of gene expression / regulation of DNA-templated transcription / chromatin / nucleolus / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding類似検索 - 分子機能 Transcription factor SOX / SOX transcription factor / POU-specific domain / POU domain / Pou domain - N-terminal to homeobox domain / POU-specific (POUs) domain signature 1. / POU-specific (POUs) domain signature 2. / POU-specific (POUs) domain profile. / Found in Pit-Oct-Unc transcription factors / Homeobox, conserved site ...Transcription factor SOX / SOX transcription factor / POU-specific domain / POU domain / Pou domain - N-terminal to homeobox domain / POU-specific (POUs) domain signature 1. / POU-specific (POUs) domain signature 2. / POU-specific (POUs) domain profile. / Found in Pit-Oct-Unc transcription factors / Homeobox, conserved site / 'Homeobox' domain signature. / Homeodomain / 'Homeobox' domain profile. / Homeodomain / Homeobox domain / HMG (high mobility group) box / HMG boxes A and B DNA-binding domains profile. / high mobility group / High mobility group box domain / High mobility group box domain superfamily / Lambda repressor-like, DNA-binding domain superfamily / Homeobox-like domain superfamily類似検索 - ドメイン・相同性 DNA / DNA (> 10) / POU domain, class 5, transcription factor 1 / Transcription factor SOX-2類似検索 - 構成要素 |
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生物種 | ![](img/tx_mammal.gif) Mus musculus (ハツカネズミ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.5 Å |
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データ登録者 | Chojnowski, G. / Wilmanns, M. / Round, E. |
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資金援助 | 1件 |
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引用 | ジャーナル: To Be Published タイトル: Crystal structure of Oct4-Soc2-HoxB1 complex 著者: Chojnowski, G. / Wilmanns, M. / Round, E. |
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履歴 | 登録 | 2022年12月7日 | 登録サイト: PDBE / 処理サイト: PDBE |
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改定 1.0 | 2023年12月20日 | Provider: repository / タイプ: Initial release |
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