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- PDB-7zeo: Structure of a hybrid-type G-quadruplex with a snapback loop and ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7zeo | ||||||||||||||||||||||||||||
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Title | Structure of a hybrid-type G-quadruplex with a snapback loop and an all-syn G-column (hybrid-1R) | ||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / hybrid G-quadruplex / snapback loop | Function / homology | DNA / DNA (> 10) | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / simulated annealing | ![]() Jana, J. / Vianney, Y.M. / Schroeder, N. / Weisz, K. | Funding support | | ![]()
![]() ![]() Title: Guiding the folding of G-quadruplexes through loop residue interactions. Authors: Jana, J. / Vianney, Y.M. / Schroder, N. / Weisz, K. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 131.6 KB | Display | ![]() |
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PDB format | ![]() | 107.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 321.9 KB | Display | ![]() |
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Full document | ![]() | 361.8 KB | Display | |
Data in XML | ![]() | 6.1 KB | Display | |
Data in CIF | ![]() | 8.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7zekC ![]() 7zemC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6325.977 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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Has ligand of interest | N |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution / Contents: 0.3 mM DNA, 90% H2O/10% D2O / Details: 30C, 10 mM potassium phosphate pH 7.0 / Label: 1 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 0.3 mM / Component: DNA / Isotopic labeling: natural abundance |
Sample conditions | Details: 30C, 10 mM potassium phosphate pH 7.0 / Ionic strength: 10 mM / Label: 1 / pH: 7.0 / Pressure: 1 atm / Temperature: 303 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE NEO / Manufacturer: Bruker / Model: AVANCE NEO / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 10 / Conformers submitted total number: 10 |