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- PDB-7yzs: Crystal structure of the sulfoquinovosyl binding protein SmoF com... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7yzs | ||||||
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Title | Crystal structure of the sulfoquinovosyl binding protein SmoF complexed with sulfoquinovose | ||||||
![]() | Sulfoquinovosyl binding protein | ||||||
![]() | SUGAR BINDING PROTEIN / agrobacterium / sulfoquinovose / SmoF | ||||||
Function / homology | Bacterial extracellular solute-binding protein / Bacterial extracellular solute-binding protein / periplasmic space / 6-deoxy-6-sulfo-beta-D-glucopyranose / Maltose-binding periplasmic protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Snow, A.J.D. / Davies, G.J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: The sulfoquinovosyl glycerol binding protein SmoF binds and accommodates plant sulfolipids. Authors: Snow, A.J.D. / Sharma, M. / Lingford, J.P. / Zhang, Y. / Mui, J.W. / Epa, R. / Goddard-Borger, E.D. / Williams, S.J. / Davies, G.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 155.2 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 792.5 KB | Display | ![]() |
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Full document | ![]() | 793.3 KB | Display | |
Data in XML | ![]() | 16.1 KB | Display | |
Data in CIF | ![]() | 23.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7qhvC ![]() 7yzuC ![]() 6ofyS S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 44074.840 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Sugar | ChemComp-YZT / |
#3: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.32 Å3/Da / Density % sol: 47.08 % |
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Crystal grow | Temperature: 283 K / Method: vapor diffusion, sitting drop / pH: 6.9 Details: 0.1 M NaBr, NaI, 0.1 M imidazole, MES pH 6.9, 13.5% MPD, PEG 1000, PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M-F / Detector: PIXEL / Date: Jan 30, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9763 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→88.51 Å / Num. obs: 38278 / % possible obs: 100 % / Redundancy: 19.2 % / CC1/2: 0.996 / Rmerge(I) obs: 0.179 / Net I/σ(I): 10.1 |
Reflection shell | Resolution: 1.8→1.84 Å / Num. unique obs: 2247 / CC1/2: 0.654 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6OFY Resolution: 1.8→88.51 Å / Cross valid method: FREE R-VALUE
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Refinement step | Cycle: LAST / Resolution: 1.8→88.51 Å
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