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Yorodumi- PDB-7ye3: Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-he... -
+Open data
-Basic information
Entry | Database: PDB / ID: 7ye3 | ||||||
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Title | Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MES | ||||||
Components | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase | ||||||
Keywords | ISOMERASE | ||||||
Function / homology | Function and homology information 5-dehydro-4-deoxy-D-glucuronate isomerase / 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity / pectin catabolic process / zinc ion binding Similarity search - Function | ||||||
Biological species | Lacticaseibacillus rhamnosus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.553 Å | ||||||
Authors | Yamamoto, Y. / Oiki, S. / Takase, R. / Mikami, B. / Hashimoto, W. | ||||||
Funding support | Japan, 1items
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Citation | Journal: J Appl Glycosci (1999) / Year: 2023 Title: Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs. Authors: Iwase, H. / Yamamoto, Y. / Yamada, A. / Kawai, K. / Oiki, S. / Watanabe, D. / Mikami, B. / Takase, R. / Hashimoto, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7ye3.cif.gz | 671.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7ye3.ent.gz | 562.9 KB | Display | PDB format |
PDBx/mmJSON format | 7ye3.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7ye3_validation.pdf.gz | 3.2 MB | Display | wwPDB validaton report |
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Full document | 7ye3_full_validation.pdf.gz | 3.3 MB | Display | |
Data in XML | 7ye3_validation.xml.gz | 59.9 KB | Display | |
Data in CIF | 7ye3_validation.cif.gz | 79.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ye/7ye3 ftp://data.pdbj.org/pub/pdb/validation_reports/ye/7ye3 | HTTPS FTP |
-Related structure data
Related structure data | 7yrsC 7e4sS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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