+Open data
-Basic information
Entry | Database: PDB / ID: 7yab | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Solution structure of zinc finger domain 1 of human ZFAND1 | ||||||||||||
Components | AN1-type zinc finger protein 1 | ||||||||||||
Keywords | METAL BINDING PROTEIN / An1-type zinc finger protein / ZFAND1 / proteasome / stress granule / proteostasis | ||||||||||||
Function / homology | Function and homology information positive regulation of intracellular protein transport / cellular response to arsenite ion / stress granule disassembly / proteasome binding / cytoplasmic stress granule / zinc ion binding / cytoplasm Similarity search - Function | ||||||||||||
Biological species | Homo sapiens (human) | ||||||||||||
Method | SOLUTION NMR / distance geometry | ||||||||||||
Authors | Fang, P.J. / Lai, C.H. / Ko, K.T. / Chang, C.F. / Hsu, S.T.D. | ||||||||||||
Funding support | Taiwan, 3items
| ||||||||||||
Citation | Journal: To Be Published Title: Structural basis of p97 recognition by human ZFAND1 Authors: Lai, C.H. / Fang, P.J. / Ko, K.T. / Chang, C.F. / Draczkowski, P. / Hsu, S.T.D. | ||||||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 7yab.cif.gz | 295.1 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb7yab.ent.gz | 247.8 KB | Display | PDB format |
PDBx/mmJSON format | 7yab.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ya/7yab ftp://data.pdbj.org/pub/pdb/validation_reports/ya/7yab | HTTPS FTP |
---|
-Related structure data
Related structure data | 7y7lC C: citing same article (ref.) |
---|---|
Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein/peptide | Mass: 4970.525 Da / Num. of mol.: 1 / Fragment: AN1-type 1,zinc finger domain 1 (ZF1) Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: ZFAND1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q8TCF1 | ||
---|---|---|---|
#2: Chemical | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Type: solution Contents: 0.34 mM [U-13C; U-15N] ZFAND1 zinc finger domain 1 (ZF1), 90% H2O/10% D2O Details: 50 mM Sodium phosphate (pH 6.5) at 300K / Label: 15N_13C_sample / Solvent system: 90% H2O/10% D2O |
---|---|
Sample | Conc.: 0.34 mM / Component: ZFAND1 zinc finger domain 1 (ZF1) / Isotopic labeling: [U-13C; U-15N] |
Sample conditions | Ionic strength: 50 mM / Label: condition1 / pH: 6.5 / Pressure: 1 atm / Temperature: 300 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 850 MHz |
---|
-Processing
NMR software |
| |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: distance geometry / Software ordinal: 1 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |