+Open data
-Basic information
Entry | Database: PDB / ID: 7xx8 | |||||||||
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Title | Solution structure of RRM1 of Human SART3 | |||||||||
Components | Squamous cell carcinoma antigen recognized by T-cells 3 | |||||||||
Keywords | RNA BINDING PROTEIN / RNA binding protein RNA recognition motif RNA processing | |||||||||
Function / homology | Function and homology information U6atac snRNA binding / ASAP complex / U4 snRNA binding / hematopoietic stem cell proliferation / transcription elongation-coupled chromatin remodeling / ubiquitin-specific protease binding / homeostasis of number of cells / spliceosomal tri-snRNP complex assembly / U6 snRNA binding / Cajal body ...U6atac snRNA binding / ASAP complex / U4 snRNA binding / hematopoietic stem cell proliferation / transcription elongation-coupled chromatin remodeling / ubiquitin-specific protease binding / homeostasis of number of cells / spliceosomal tri-snRNP complex assembly / U6 snRNA binding / Cajal body / spliceosomal snRNP assembly / cell morphogenesis / mRNA splicing, via spliceosome / nucleosome assembly / histone binding / regulation of gene expression / nuclear speck / RNA binding / nucleoplasm / nucleus / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Kim, I. / Bang, K.M. / Park, C. / Kim, N.K. / Suh, J.Y. | |||||||||
Funding support | Korea, Republic Of, 1items
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Citation | Journal: To Be Published Title: Solution structure of RRM1 of Human SART3 Authors: Kim, I. / Bang, K.M. / Park, C. / Kim, N.K. / Suh, J.Y. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7xx8.cif.gz | 556.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7xx8.ent.gz | 466.9 KB | Display | PDB format |
PDBx/mmJSON format | 7xx8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7xx8_validation.pdf.gz | 552.8 KB | Display | wwPDB validaton report |
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Full document | 7xx8_full_validation.pdf.gz | 797.5 KB | Display | |
Data in XML | 7xx8_validation.xml.gz | 44.8 KB | Display | |
Data in CIF | 7xx8_validation.cif.gz | 65 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xx/7xx8 ftp://data.pdbj.org/pub/pdb/validation_reports/xx/7xx8 | HTTPS FTP |
-Related structure data
Related structure data | 7xx9C C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 10738.190 Da / Num. of mol.: 1 / Fragment: RRM1 domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: SART3, KIAA0156, TIP110 / Production host: Escherichia coli (E. coli) / References: UniProt: Q15020 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 0.8 mM [U-100% 13C; U-100% 15N] RRM1 of Human SART3, 20 mM sodium phosphate, 1 mM DTT, 90% H2O/10% D2O Label: 1 / Solvent system: 90% H2O/10% D2O | ||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: 20 mM / Label: 1 / pH: 6.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker ascend / Manufacturer: Bruker / Model: ascend / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 2000 / Conformers submitted total number: 20 |