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Open data
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Basic information
Entry | Database: PDB / ID: 7xpw | ||||||
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Title | Structure of OhTRP14 | ||||||
![]() | Thioredoxin domain-containing protein 17 | ||||||
![]() | ELECTRON TRANSPORT / Oncomelania hupensis / TRP14 / Redox regulation / Immunological properties | ||||||
Function / homology | Thioredoxin domain-containing protein 17-like / Thioredoxin domain-containing protein 17-like domain / Thioredoxin domain-containing protein 17-like, thioredoxin domain / protein-disulfide reductase (NAD(P)H) activity / Thioredoxin-like superfamily / Thioredoxin domain-containing protein 17![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, S.Q. / Huang, S.Q. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural insights into the redox regulation of Oncomelania hupensis TRP14 and its potential role in the snail host response to parasite invasion. Authors: Huang, S. / Wang, S. / Su, Z. / Cao, Y. / Hong, W. / Lin, T. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 43.4 KB | Display | ![]() |
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PDB format | ![]() | 27.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 418.2 KB | Display | ![]() |
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Full document | ![]() | 419 KB | Display | |
Data in XML | ![]() | 8.4 KB | Display | |
Data in CIF | ![]() | 11.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7xq3C ![]() 1wouS S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14393.259 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.89 Å3/Da / Density % sol: 34.95 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 5.9 / Details: 30% PEG 3350, 0.1M Bis-tris PH 5.9 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: PSI PILATUS 6M / Detector: PIXEL / Date: Jan 6, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9793 Å / Relative weight: 1 |
Reflection | Resolution: 1.77→50 Å / Num. obs: 10429 / % possible obs: 98.4 % / Redundancy: 6.3 % / CC1/2: 0.966 / Rmerge(I) obs: 0.052 / Rsym value: 0.052 / Net I/σ(I): 28.535 |
Reflection shell | Resolution: 1.77→1.8 Å / Redundancy: 6.1 % / Rmerge(I) obs: 0.181 / Num. unique obs: 10429 / CC1/2: 0.966 / Rsym value: 0.181 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1WOU Resolution: 1.77→34.86 Å / Cor.coef. Fo:Fc: 0.96 / Cor.coef. Fo:Fc free: 0.927 / SU B: 2.774 / SU ML: 0.089 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.143 / ESU R Free: 0.144 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 55.83 Å2 / Biso mean: 19.91 Å2 / Biso min: 8.42 Å2
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Refinement step | Cycle: final / Resolution: 1.77→34.86 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.77→1.815 Å / Rfactor Rfree error: 0
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