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Yorodumi- PDB-7xge: Crystal structure of MCL-1 in complex with computationally design... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 7xge | ||||||
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| Title | Crystal structure of MCL-1 in complex with computationally designed inhibitor protein | ||||||
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Keywords | APOTOSIS / DE NOVO PROTEIN / computational design | ||||||
| Function / homology | Function and homology informationpositive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / cell fate determination / cellular homeostasis / mitochondrial fusion / Bcl-2 family protein complex / BH3 domain binding / negative regulation of anoikis / protein transmembrane transporter activity / negative regulation of extrinsic apoptotic signaling pathway in absence of ligand / response to cytokine ...positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / cell fate determination / cellular homeostasis / mitochondrial fusion / Bcl-2 family protein complex / BH3 domain binding / negative regulation of anoikis / protein transmembrane transporter activity / negative regulation of extrinsic apoptotic signaling pathway in absence of ligand / response to cytokine / extrinsic apoptotic signaling pathway in absence of ligand / negative regulation of autophagy / release of cytochrome c from mitochondria / intrinsic apoptotic signaling pathway in response to DNA damage / Signaling by ALK fusions and activated point mutants / positive regulation of neuron apoptotic process / channel activity / Interleukin-4 and Interleukin-13 signaling / regulation of apoptotic process / mitochondrial outer membrane / positive regulation of apoptotic process / protein heterodimerization activity / DNA damage response / negative regulation of apoptotic process / mitochondrion / nucleoplasm / nucleus / membrane / cytosol / cytoplasm Similarity search - Function | ||||||
| Biological species | synthetic construct (others) Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.38 Å | ||||||
Authors | Oh, B.-H. / Kim, S. | ||||||
| Funding support | 1items
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Citation | Journal: Comput Struct Biotechnol J / Year: 2022Title: Computational design of an apoptogenic protein that binds BCL-xL and MCL-1 simultaneously and potently. Authors: Kim, S. / Park, H.S. / Oh, B.H. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 7xge.cif.gz | 501.7 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb7xge.ent.gz | 419.1 KB | Display | PDB format |
| PDBx/mmJSON format | 7xge.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 7xge_validation.pdf.gz | 499.1 KB | Display | wwPDB validaton report |
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| Full document | 7xge_full_validation.pdf.gz | 524.4 KB | Display | |
| Data in XML | 7xge_validation.xml.gz | 45.3 KB | Display | |
| Data in CIF | 7xge_validation.cif.gz | 62.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xg/7xge ftp://data.pdbj.org/pub/pdb/validation_reports/xg/7xge | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7xgfC ![]() 7xggC C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
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