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Open data
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Basic information
Entry | Database: PDB / ID: 7x72 | ||||||
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Title | SFTSV 5 fold pentamer | ||||||
![]() | (Envelopment polyprotein) x 2 | ||||||
![]() | VIRAL PROTEIN / SFTSV / virus / glycoproteins / assembly | ||||||
Function / homology | ![]() host cell Golgi membrane / host cell endoplasmic reticulum membrane / symbiont entry into host cell / fusion of virus membrane with host endosome membrane / virion attachment to host cell / virion membrane / membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 7.2 Å | ||||||
![]() | Sun, Z. / Lou, Z. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Architecture of severe fever with thrombocytopenia syndrome virus. Authors: Zixian Sun / Jing Cheng / Yuan Bai / Lin Cao / Daoxin Xie / Fei Deng / Xinzheng Zhang / Zihe Rao / Zhiyong Lou / ![]() | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 161.8 KB | Display | ![]() |
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PDB format | ![]() | 122.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 35.7 KB | Display | |
Data in CIF | ![]() | 52.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 33030MC ![]() 7x6uC ![]() 7x6wC M: map data used to model this data C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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2 |
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3 |
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Symmetry | Point symmetry: (Schoenflies symbol: C5 (5 fold cyclic)) |
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Components
#1: Protein | Mass: 61745.293 Da / Num. of mol.: 1 / Fragment: Gn / Source method: isolated from a natural source Source: (natural) ![]() Cell line: Vero / References: UniProt: A0A1S6XXI4 |
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#2: Protein | Mass: 54927.797 Da / Num. of mol.: 1 / Fragment: Gc / Source method: isolated from a natural source Source: (natural) ![]() Cell line: Vero / References: UniProt: A0A1S6XXK1 |
#3: Polysaccharide | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta- ...alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Source method: isolated from a genetically manipulated source |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ELECTRON MICROSCOPY |
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EM experiment | Aggregation state: PARTICLE / 3D reconstruction method: single particle reconstruction |
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Sample preparation
Component | Name: Severe fever with thrombocytopenia syndrome virus / Type: VIRUS / Entity ID: #1-#2 / Source: NATURAL |
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Source (natural) | Organism: ![]() |
Details of virus | Empty: NO / Enveloped: YES / Isolate: STRAIN / Type: VIRION |
Buffer solution | pH: 7.4 |
Specimen | Embedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy imaging
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Microscopy | Model: FEI TITAN KRIOS |
Electron gun | Electron source: ![]() |
Electron lens | Mode: BRIGHT FIELD / Nominal defocus max: 2500 nm / Nominal defocus min: 2000 nm |
Image recording | Electron dose: 1.38 e/Å2 / Film or detector model: GATAN K2 SUMMIT (4k x 4k) |
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Processing
EM software |
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Image processing |
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CTF correction |
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3D reconstruction | Resolution: 7.2 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 118467 / Symmetry type: POINT | ||||||||||||||||||||||||
Refinement | Highest resolution: 7.2 Å | ||||||||||||||||||||||||
Refine LS restraints |
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