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Open data
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Basic information
Entry | Database: PDB / ID: 7wrn | ||||||
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Title | ESRP1 RNaseH-qRRM1 tandem domain | ||||||
![]() | Epithelial splicing regulatory protein 1 | ||||||
![]() | SPLICING / qRRM domain / RNA binding / circRNA / RNA BINDING PROTEIN / RNase-H | ||||||
Function / homology | ![]() regulation of inner ear auditory receptor cell fate specification / FGFR2 alternative splicing / regulation of RNA splicing / RNA splicing / mRNA processing / Signaling by BRAF and RAF1 fusions / nuclear body / ribonucleoprotein complex / mRNA binding / nucleoplasm / nucleus Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wu, B.X. / Guo, W.T. / Patel, D.J. | ||||||
Funding support | 1items
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![]() | ![]() Title: ESRP1 RNaseH-qRRM1 tandem domain Authors: Wu, B.X. / Guo, W.T. / Patel, D.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 162.8 KB | Display | ![]() |
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PDB format | ![]() | 106.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 443.4 KB | Display | ![]() |
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Full document | ![]() | 447.9 KB | Display | |
Data in XML | ![]() | 14.4 KB | Display | |
Data in CIF | ![]() | 20.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7vkiS S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 34767.449 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-GOL / |
#3: Water | ChemComp-HOH / |
Has ligand of interest | N |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.03 Å3/Da / Density % sol: 39.39 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 0.1 M Potassium thiocyanate, 30% w/v Polyethylene glycol monomethyl ether 2000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jan 21, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97852 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→30 Å / Num. obs: 25216 / % possible obs: 100 % / Redundancy: 25.4 % / Biso Wilson estimate: 24.49 Å2 / CC1/2: 1 / Rmerge(I) obs: 0.108 / Rpim(I) all: 0.022 / Rrim(I) all: 0.111 / Net I/σ(I): 26.9 |
Reflection shell | Resolution: 1.85→1.95 Å / Redundancy: 25.6 % / Rmerge(I) obs: 1.084 / Mean I/σ(I) obs: 3.7 / Num. unique obs: 3581 / CC1/2: 0.894 / Rpim(I) all: 0.217 / Rrim(I) all: 1.106 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 7VKI Resolution: 1.85→29.94 Å / SU ML: 0.1636 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 22.836 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.16 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.85→29.94 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: -7.84778518298 Å / Origin y: -20.9606789864 Å / Origin z: -28.2923155271 Å
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Refinement TLS group | Selection details: all |