- PDB-7wa4: Crystal structure of GIGANTEA in complex with LKP2 -
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Basic information
Entry
Database: PDB / ID: 7wa4
Title
Crystal structure of GIGANTEA in complex with LKP2
Components
Adagio protein 2
Protein GIGANTEA
Keywords
CIRCADIAN CLOCK PROTEIN / GI / LOV domain / Flavin-mononucleotide
Function / homology
Function and homology information
positive regulation of long-day photoperiodism, flowering / temperature compensation of the circadian clock / regulation of long-day photoperiodism, flowering / red, far-red light phototransduction / response to far red light / response to blue light / flower development / : / SCF ubiquitin ligase complex / Cajal body ...positive regulation of long-day photoperiodism, flowering / temperature compensation of the circadian clock / regulation of long-day photoperiodism, flowering / red, far-red light phototransduction / response to far red light / response to blue light / flower development / : / SCF ubiquitin ligase complex / Cajal body / photoreceptor activity / response to cold / regulation of circadian rhythm / circadian rhythm / response to hydrogen peroxide / cell differentiation / protein ubiquitination / regulation of DNA-templated transcription / nucleoplasm / nucleus / cytoplasm / cytosol Similarity search - Function
GIGANTEA / Kelch repeat type 2 / Kelch motif / F-box-like domain superfamily / F-box-like / F-box domain / PAS domain / Kelch-type beta propeller / PAS repeat profile. / PAS domain / PAS domain superfamily Similarity search - Domain/homology
Mass: 89438.031 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Arabidopsis thaliana (thale cress) / Gene: GI, At1g22770, T22J18.6 / Production host: Escherichia coli B (bacteria) / References: UniProt: Q9SQI2
#2: Protein
Adagioprotein2 / F-box only protein 2c / FBX2c / Flavin-binding kelch repeat F-box protein 1-like protein 1 / FKF1- ...F-box only protein 2c / FBX2c / Flavin-binding kelch repeat F-box protein 1-like protein 1 / FKF1-like protein 1 / LOV kelch protein 2
Mass: 15321.668 Da / Num. of mol.: 1 / Fragment: LKP2 LOV domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Arabidopsis thaliana (thale cress) / Gene: ADO2, FKL1, LKP2, At2g18915, F19F24.11 / Production host: Escherichia coli B (bacteria) / References: UniProt: Q8W420
Method to determine structure: SAD / Resolution: 3.5→90.72 Å / SU ML: 0.61 / Cross valid method: THROUGHOUT / σ(F): 0.14 / Phase error: 31.75 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.2944
1727
10.01 %
Rwork
0.2454
15526
-
obs
0.2503
17253
95.08 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
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