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Open data
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Basic information
Entry | Database: PDB / ID: 7w91 | |||||||||
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Title | Residues 440-490 of centrosomal protein 63 | |||||||||
![]() | Centrosomal protein of 63 kDa![]() | |||||||||
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Function / homology | ![]() negative regulation of protein K63-linked ubiquitination / de novo centriole assembly involved in multi-ciliated epithelial cell differentiation / centriole replication / centriolar satellite / spindle assembly / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Yun, H.Y. / Ku, B. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Architectural basis for cylindrical self-assembly governing Plk4-mediated centriole duplication in human cells. Authors: Il Ahn, J. / Zhang, L. / Ravishankar, H. / Fan, L. / Kirsch, K. / Zeng, Y. / Meng, L. / Park, J.E. / Yun, H.Y. / Ghirlando, R. / Ma, B. / Ball, D. / Ku, B. / Nussinov, R. / Schmit, J.D. / ...Authors: Il Ahn, J. / Zhang, L. / Ravishankar, H. / Fan, L. / Kirsch, K. / Zeng, Y. / Meng, L. / Park, J.E. / Yun, H.Y. / Ghirlando, R. / Ma, B. / Ball, D. / Ku, B. / Nussinov, R. / Schmit, J.D. / Heinz, W.F. / Kim, S.J. / Karpova, T. / Wang, Y.X. / Lee, K.S. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 132.4 KB | Display | ![]() |
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PDB format | ![]() | 111.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 6842.105 Da / Num. of mol.: 12 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.07 Å3/Da / Density % sol: 75.72 % |
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Crystal grow![]() | Temperature: 291 K / Method: vapor diffusion Details: 0.6 M sodium citrate tribasic dihydrate, 0.1 M Tris-HCl pH 7.75, 0.4 M NDSB-221, 0.1M ethylene-diamine-tetraacetic acid |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: May 29, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3.292→50 Å / Num. obs: 37129 / % possible obs: 90.4 % / Redundancy: 2.9 % / Rmerge(I) obs: 0.111 / Net I/σ(I): 17.92 |
Reflection shell | Resolution: 3.292→3.36 Å / Rmerge(I) obs: 0.221 / Num. unique obs: 1383 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 221.37 Å2 / Biso mean: 57.3548 Å2 / Biso min: 20.99 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 3.292→36.229 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0
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