Entry | Database: PDB / ID: 7vgk |
---|
Title | Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI |
---|
Components | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase |
---|
Keywords | ISOMERASE / hexuronate-metabolizing enzyme / Lactobacillus / heparin |
---|
Function / homology | Function and homology information
5-dehydro-4-deoxy-D-glucuronate isomerase / 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity / pectin catabolic process / zinc ion bindingSimilarity search - Function 5-keto 4-deoxyuronate isomerase / 5-keto-4-deoxyuronate isomerase, N-terminal / KduI/IolB isomerase / KduI/IolB family / RmlC-like cupin domain superfamily / RmlC-like jelly roll foldSimilarity search - Domain/homology |
---|
Biological species | Lactobacillus rhamnosus (bacteria) |
---|
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.1 Å |
---|
Authors | Iwase, H. / Oiki, S. / Mikami, B. / Takase, R. / Hashimoto, W. |
---|
Funding support | Japan, 1items Organization | Grant number | Country |
---|
Japan Society for the Promotion of Science (JSPS) | | Japan |
|
---|
Citation | Journal: J.Appl.Glyosci. / Year: 2023 Title: Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs Authors: Iwase, H. / Yamamoto, Y. / Yamada, A. / Kawai, K. / Oiki, S. / Watanabe, D. / Mikami, B. / Takase, R. / Hashimoto, W. |
---|
History | Deposition | Sep 16, 2021 | Deposition site: PDBJ / Processing site: PDBJ |
---|
Revision 1.0 | Oct 19, 2022 | Provider: repository / Type: Initial release |
---|
Revision 1.1 | Nov 15, 2023 | Group: Data collection / Database references Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.pdbx_database_id_DOI / _citation.title / _citation.year |
---|
Revision 1.2 | Nov 29, 2023 | Group: Refinement description / Category: pdbx_initial_refinement_model |
---|
|
---|