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Yorodumi- PDB-7uuw: Cryogenic electron microscopy 3D map of F-actin bound by the Acti... -
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-Basic information
Entry | Database: PDB / ID: 7uuw | ||||||
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Title | Cryogenic electron microscopy 3D map of F-actin bound by the Actin Binding Domain of alpha-catenin ortholog, HMP1 | ||||||
Components |
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Keywords | CELL ADHESION / alpha-catenin / HMP1 / Actin Binding Domain / F-actin / F-actin binding protein / cell-cell junction | ||||||
Function / homology | Function and homology information VEGFR2 mediated vascular permeability / embryonic body morphogenesis / cell migration involved in gastrulation / cell-cell adhesion mediated by cadherin / catenin complex / apical junction complex / cortical actin cytoskeleton organization / cytoskeletal motor activator activity / tropomyosin binding / mesenchyme migration ...VEGFR2 mediated vascular permeability / embryonic body morphogenesis / cell migration involved in gastrulation / cell-cell adhesion mediated by cadherin / catenin complex / apical junction complex / cortical actin cytoskeleton organization / cytoskeletal motor activator activity / tropomyosin binding / mesenchyme migration / troponin I binding / myosin heavy chain binding / filamentous actin / actin filament bundle / skeletal muscle thin filament assembly / striated muscle thin filament / actin filament bundle assembly / skeletal muscle myofibril / actin monomer binding / skeletal muscle fiber development / stress fiber / titin binding / actin filament polymerization / filopodium / actin filament / regulation of actin cytoskeleton organization / adherens junction / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / beta-catenin binding / cell-cell adhesion / calcium-dependent protein binding / regulation of protein localization / actin filament binding / cell migration / lamellipodium / cell body / hydrolase activity / cadherin binding / protein domain specific binding / calcium ion binding / positive regulation of gene expression / magnesium ion binding / ATP binding / identical protein binding / cytoplasm Similarity search - Function | ||||||
Biological species | Oryctolagus cuniculus (rabbit) Caenorhabditis elegans (invertebrata) | ||||||
Method | ELECTRON MICROSCOPY / helical reconstruction / cryo EM / Resolution: 3.36 Å | ||||||
Authors | Rangarajan, E.S. / Smith, E.W. / Izard, T. | ||||||
Funding support | United States, 1items
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Citation | Journal: J Biol Chem / Year: 2023 Title: The nematode α-catenin ortholog, HMP1, has an extended α-helix when bound to actin filaments. Authors: Erumbi S Rangarajan / Emmanuel W Smith / Tina Izard / Abstract: The regulation of cell-cell junctions during epidermal morphogenesis ensures tissue integrity, a process regulated by α-catenin. This cytoskeletal protein connects the cadherin complex to ...The regulation of cell-cell junctions during epidermal morphogenesis ensures tissue integrity, a process regulated by α-catenin. This cytoskeletal protein connects the cadherin complex to filamentous actin at cell-cell junctions. The cadherin-catenin complex plays key roles in cell physiology, organism development, and disease. While mutagenesis of Caenorhabditis elegans cadherin and catenin shows that these proteins are key for embryonic morphogenesis, we know surprisingly little about their structure and attachment to the cytoskeleton. In contrast to mammalian α-catenin that functions as a dimer or monomer, the α-catenin ortholog from C. elegans, HMP1 for humpback, is a monomer. Our cryogenic electron microscopy (cryoEM) structure of HMP1/α-catenin reveals that the amino- and carboxy-terminal domains of HMP1/α-catenin are disordered and not in contact with the remaining HMP1/α-catenin middle domain. Since the carboxy-terminal HMP1/α-catenin domain is the F-actin-binding domain (FABD), this interdomain constellation suggests that HMP1/α-catenin is constitutively active, which we confirm biochemically. Our perhaps most surprising finding, given the high sequence similarity between the mammalian and nematode proteins, is our cryoEM structure of HMP1/α-catenin bound to F-actin. Unlike the structure of mammalian α-catenin bound to F-actin, binding to F-actin seems to allosterically convert a loop region of the HMP1/α-catenin FABD to extend an HMP1/α-catenin FABD α-helix. We use cryoEM and bundling assays to show for the first time how the FABD of HMP1/α-catenin bundles actin in the absence of force. Collectively, our data advance our understanding of α-catenin regulation of cell-cell contacts and additionally aid our understanding of the evolution of multicellularity in metazoans. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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PDBx/mmCIF format | 7uuw.cif.gz | 549.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7uuw.ent.gz | 448.3 KB | Display | PDB format |
PDBx/mmJSON format | 7uuw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7uuw_validation.pdf.gz | 1.4 MB | Display | wwPDB validaton report |
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Full document | 7uuw_full_validation.pdf.gz | 1.5 MB | Display | |
Data in XML | 7uuw_validation.xml.gz | 93.9 KB | Display | |
Data in CIF | 7uuw_validation.cif.gz | 126 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/uu/7uuw ftp://data.pdbj.org/pub/pdb/validation_reports/uu/7uuw | HTTPS FTP |
-Related structure data
Related structure data | 26805MC C: citing same article (ref.) M: map data used to model this data |
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Similar structure data | Similarity search - Function & homologyF&H Search |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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