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Open data
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Basic information
Entry | Database: PDB / ID: 7uqo | ||||||
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Title | Pathogenesis related 10-10 (S)-tetrahydropapaverine complex | ||||||
![]() | Pathogenesis Related 10-10 protein | ||||||
![]() | BIOSYNTHETIC PROTEIN / binding protein / alkaloids / opium poppy / (S)-tetrahydropapaverine / tetrahydropapaverine | ||||||
Function / homology | Chem-S9T![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Carr, S.C. / Ng, K.K.S. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Alkaloid binding to opium poppy major latex proteins triggers structural modification and functional aggregation. Authors: Ozber, N. / Carr, S.C. / Morris, J.S. / Liang, S. / Watkins, J.L. / Caldo, K.M. / Hagel, J.M. / Ng, K.K.S. / Facchini, P.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 54.4 KB | Display | ![]() |
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PDB format | ![]() | 30.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 771.9 KB | Display | ![]() |
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Full document | ![]() | 772.2 KB | Display | |
Data in XML | ![]() | 8.8 KB | Display | |
Data in CIF | ![]() | 11.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7uqlSC ![]() 7uqmC ![]() 7uqnC S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17625.895 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-S9T / ( |
#3: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.14 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: PEG 3350, Bis-Tris pH 5.5 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Feb 25, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 1.75→36.8 Å / Num. obs: 16490 / % possible obs: 99.4 % / Redundancy: 8.6 % / Biso Wilson estimate: 27.67 Å2 / CC1/2: 0.999 / Net I/σ(I): 22.55 |
Reflection shell | Resolution: 1.75→1.8 Å / Num. unique obs: 1170 / CC1/2: 0.904 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 7UQL Resolution: 1.75→36.8 Å / SU ML: 0.1885 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 24.3591 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 37.93 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.75→36.8 Å
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Refine LS restraints |
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LS refinement shell |
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