- PDB-7qrw: Crystal structure of NHL domain of TRIM3 -
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Basic information
Entry
Database: PDB / ID: 7qrw
Title
Crystal structure of NHL domain of TRIM3
Components
Isoform 4 of Tripartite motif-containing protein 3
Keywords
LIGASE / E3 / TRIM / TRIM3 / NHL domain
Function / homology
Function and homology information
positive regulation of toll-like receptor 3 signaling pathway / protein K63-linked ubiquitination / translation repressor activity / RING-type E3 ubiquitin transferase / protein polyubiquitination / Interferon gamma signaling / ubiquitin protein ligase activity / protein transport / nervous system development / proteasome-mediated ubiquitin-dependent protein catabolic process ...positive regulation of toll-like receptor 3 signaling pathway / protein K63-linked ubiquitination / translation repressor activity / RING-type E3 ubiquitin transferase / protein polyubiquitination / Interferon gamma signaling / ubiquitin protein ligase activity / protein transport / nervous system development / proteasome-mediated ubiquitin-dependent protein catabolic process / early endosome / negative regulation of translation / dendrite / Golgi apparatus / zinc ion binding / identical protein binding / cytoplasm Similarity search - Function
Resolution: 1.7→47.58 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.956 / SU B: 4.473 / SU ML: 0.073 / SU R Cruickshank DPI: 0.1075 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.108 / ESU R Free: 0.105 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.215
1522
4.9 %
RANDOM
Rwork
0.1823
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obs
0.1839
29599
96.56 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
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