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Yorodumi- PDB-7q5w: The tandem SH2 domains of SYK with a bound TYROBP diphospho-ITAM ... -
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-Basic information
Entry | Database: PDB / ID: 7q5w | ||||||
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Title | The tandem SH2 domains of SYK with a bound TYROBP diphospho-ITAM peptide | ||||||
Components |
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Keywords | TRANSFERASE / Signalling / kinase | ||||||
Function / homology | Function and homology information myeloid leukocyte activation / positive regulation of receptor localization to synapse / stimulatory killer cell immunoglobulin-like receptor signaling pathway / positive regulation of macrophage fusion / positive regulation of osteoclast development / microglial cell activation involved in immune response / negative regulation of transforming growth factor beta1 production / positive regulation of natural killer cell activation / Other semaphorin interactions / T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell ...myeloid leukocyte activation / positive regulation of receptor localization to synapse / stimulatory killer cell immunoglobulin-like receptor signaling pathway / positive regulation of macrophage fusion / positive regulation of osteoclast development / microglial cell activation involved in immune response / negative regulation of transforming growth factor beta1 production / positive regulation of natural killer cell activation / Other semaphorin interactions / T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell / positive regulation of microglial cell mediated cytotoxicity / interleukin-15 receptor binding / regulation of superoxide anion generation / regulation of neutrophil degranulation / regulation of arachidonate secretion / cellular response to lectin / positive regulation of interleukin-3 production / gamma-delta T cell differentiation / positive regulation of gamma-delta T cell differentiation / B cell receptor complex / serotonin secretion by platelet / positive regulation of mast cell cytokine production / Toll-like receptor binding / regulation of platelet aggregation / positive regulation of alpha-beta T cell proliferation / leukocyte activation involved in immune response / neutrophil activation involved in immune response / positive regulation of mast cell degranulation / lymph vessel development / regulation of platelet activation / collagen-activated tyrosine kinase receptor signaling pathway / cell activation / regulation of phagocytosis / FLT3 signaling through SRC family kinases / cellular response to lipid / positive regulation of killing of cells of another organism / macrophage activation involved in immune response / beta selection / cellular response to molecule of fungal origin / early phagosome / positive regulation of protein localization to cell surface / regulation of tumor necrosis factor-mediated signaling pathway / leukotriene biosynthetic process / regulation of DNA-binding transcription factor activity / positive regulation of monocyte chemotactic protein-1 production / interleukin-3-mediated signaling pathway / apoptotic cell clearance / positive regulation of cell adhesion mediated by integrin / positive regulation of granulocyte macrophage colony-stimulating factor production / Interleukin-2 signaling / positive regulation of alpha-beta T cell differentiation / blood vessel morphogenesis / Fc epsilon receptor (FCERI) signaling / Signal regulatory protein family interactions / Fc-gamma receptor signaling pathway involved in phagocytosis / negative regulation of type I interferon production / mast cell degranulation / positive regulation of B cell differentiation / T cell receptor complex / leukocyte cell-cell adhesion / negative regulation of interleukin-10 production / positive regulation of interleukin-4 production / : / Dectin-2 family / negative regulation of B cell proliferation / stimulatory C-type lectin receptor signaling pathway / positive regulation of receptor internalization / Fc-epsilon receptor signaling pathway / amyloid-beta clearance / phospholipase binding / positive regulation of type I interferon production / positive regulation of interleukin-10 production / semaphorin-plexin signaling pathway / FCGR activation / cellular response to low-density lipoprotein particle stimulus / negative regulation of long-term synaptic potentiation / response to axon injury / positive regulation of bone resorption / phosphatase binding / Role of phospholipids in phagocytosis / Role of LAT2/NTAL/LAB on calcium mobilization / cellular defense response / Signaling by CSF3 (G-CSF) / cell surface receptor protein tyrosine kinase signaling pathway / negative regulation of inflammatory response to antigenic stimulus / forebrain development / GPVI-mediated activation cascade / positive regulation of interleukin-12 production / phosphotyrosine residue binding / neutrophil chemotaxis / positive regulation of TORC1 signaling / positive regulation of calcium-mediated signaling / SH2 domain binding / Integrin signaling / regulation of ERK1 and ERK2 cascade / B cell differentiation / FCERI mediated Ca+2 mobilization / FCGR3A-mediated IL10 synthesis / osteoclast differentiation / secretory granule membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.2 Å | ||||||
Authors | Bradshaw, W.J. / Katis, V.L. / Chen, Z. / Bountra, C. / von Delft, F. / Gileadi, O. / Brennan, P.E. | ||||||
Funding support | United States, 1items
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Citation | Journal: To Be Published Title: The tandem SH2 domains of SYK Authors: Bradshaw, W.J. / Katis, V.L. / Chen, Z. / Bountra, C. / von Delft, F. / Gileadi, O. / Brennan, P.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7q5w.cif.gz | 352.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7q5w.ent.gz | Display | PDB format | |
PDBx/mmJSON format | 7q5w.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7q5w_validation.pdf.gz | 562.8 KB | Display | wwPDB validaton report |
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Full document | 7q5w_full_validation.pdf.gz | 573.7 KB | Display | |
Data in XML | 7q5w_validation.xml.gz | 58.7 KB | Display | |
Data in CIF | 7q5w_validation.cif.gz | 80.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/q5/7q5w ftp://data.pdbj.org/pub/pdb/validation_reports/q5/7q5w | HTTPS FTP |
-Related structure data
Related structure data | 7q5tC 7q5uC 7q63C 1a81S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
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-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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