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Open data
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Basic information
Entry | Database: PDB / ID: 7pze | ||||||
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Title | MademoiseLLE domain 2 of Rrm4 from Ustilago maydis | ||||||
![]() | Chromosome 8, whole genome shotgun sequence | ||||||
![]() | RNA BINDING PROTEIN / Endosome / PAM2 / Poly(A)-binding protein / RNA transport / Ustilago maydis | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Devans, S. / Schott-Verdugo, s. / Muentjes, K. / Olgeiser, L. / Reiners, J. / Schmitt, L. / Hoeppner, A. / Smits, S.H. / Gohlke, H. / Feldbruegge, M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: A MademoiseLLE domain binding platform links the key RNA transporter to endosomes. Authors: Devan, S.K. / Schott-Verdugo, S. / Muntjes, K. / Bismar, L. / Reiners, J. / Hachani, E. / Schmitt, L. / Hoppner, A. / Smits, S.H. / Gohlke, H. / Feldbrugge, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 54.8 KB | Display | ![]() |
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PDB format | ![]() | 28 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 435.5 KB | Display | ![]() |
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Full document | ![]() | 435.5 KB | Display | |
Data in XML | ![]() | 6.4 KB | Display | |
Data in CIF | ![]() | 7.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 40383.379 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 285 K / Method: vapor diffusion / pH: 8 / Details: 0.2 M potassium chloride, 20 % (w/v) PEG 3350 |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER2 X 16M / Detector: PIXEL / Date: Apr 20, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97934 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→33.51 Å / Num. obs: 6898 / % possible obs: 98.34 % / Redundancy: 7.3 % / Biso Wilson estimate: 70.57 Å2 / CC1/2: 0.997 / Net I/σ(I): 17.9 |
Reflection shell | Resolution: 2.6→2.69 Å / Mean I/σ(I) obs: 2.79 / Num. unique obs: 665 / CC1/2: 0.859 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: own model Resolution: 2.6→43.01 Å / SU ML: 0.3335 / Cross valid method: FREE R-VALUE / σ(F): 1.37 / Phase error: 31.1496 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||
Displacement parameters | Biso mean: 71 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→43.01 Å
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Refine LS restraints |
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LS refinement shell |
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