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Yorodumi- PDB-7oz0: Solution structure of the N-terminal domain of human telomeric Re... -
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-Basic information
Entry | Database: PDB / ID: 7oz0 | |||||||||
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Title | Solution structure of the N-terminal domain of human telomeric Repeat-binding factor 2-interacting protein 1 (hRap1): implication for Rap1-TRF2 interaction in Human. | |||||||||
Components | Telomeric repeat-binding factor 2-interacting protein 1 | |||||||||
Keywords | TRANSCRIPTION / Telomere Integrity | |||||||||
Function / homology | Function and homology information negative regulation of DNA recombination at telomere / negative regulation of telomere maintenance / protection from non-homologous end joining at telomere / telomere maintenance via telomere lengthening / shelterin complex / Telomere C-strand synthesis initiation / Telomere C-strand (Lagging Strand) Synthesis / positive regulation of telomere maintenance / nuclear telomere cap complex / Processive synthesis on the C-strand of the telomere ...negative regulation of DNA recombination at telomere / negative regulation of telomere maintenance / protection from non-homologous end joining at telomere / telomere maintenance via telomere lengthening / shelterin complex / Telomere C-strand synthesis initiation / Telomere C-strand (Lagging Strand) Synthesis / positive regulation of telomere maintenance / nuclear telomere cap complex / Processive synthesis on the C-strand of the telomere / Polymerase switching on the C-strand of the telomere / Removal of the Flap Intermediate from the C-strand / G-rich strand telomeric DNA binding / telomere capping / regulation of telomere maintenance / protein localization to chromosome, telomeric region / regulation of double-strand break repair via homologous recombination / nuclear chromosome / telomeric DNA binding / Telomere Extension By Telomerase / telomere maintenance via telomerase / phosphatase binding / Packaging Of Telomere Ends / Recognition and association of DNA glycosylase with site containing an affected purine / Cleavage of the damaged purine / Recognition and association of DNA glycosylase with site containing an affected pyrimidine / Cleavage of the damaged pyrimidine / Inhibition of DNA recombination at telomere / Meiotic synapsis / telomere maintenance / negative regulation of protein phosphorylation / male germ cell nucleus / DNA Damage/Telomere Stress Induced Senescence / positive regulation of non-canonical NF-kappaB signal transduction / positive regulation of NF-kappaB transcription factor activity / positive regulation of canonical NF-kappaB signal transduction / chromosome, telomeric region / nuclear body / intracellular signal transduction / regulation of DNA-templated transcription / nucleoplasm / nucleus / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Miron, S. / LeDU, M.H. / Gaullier, G. / Zinn-justin, S. / Cuniasse, P. | |||||||||
Funding support | France, 2items
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Citation | Journal: To Be Published Title: Solution structure of the N-terminal domain of human telomeric Repeat-binding factor 2-interacting protein 1 (hRap1): implication for Rap1-TRF2 interaction in Human. Authors: Miron, S. / LeDU, M.H. / Gaullier, G. / Zinn-justin, S. / Cuniasse, P. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7oz0.cif.gz | 657.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7oz0.ent.gz | 555.4 KB | Display | PDB format |
PDBx/mmJSON format | 7oz0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7oz0_validation.pdf.gz | 394.3 KB | Display | wwPDB validaton report |
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Full document | 7oz0_full_validation.pdf.gz | 491.6 KB | Display | |
Data in XML | 7oz0_validation.xml.gz | 34 KB | Display | |
Data in CIF | 7oz0_validation.cif.gz | 58.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/oz/7oz0 ftp://data.pdbj.org/pub/pdb/validation_reports/oz/7oz0 | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12138.556 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: TERF2IP, DRIP5, RAP1, PP8000 / Production host: Escherichia coli (E. coli) / References: UniProt: Q9NYB0 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1), 90% H2O/10% D2O Details: 50 mM MES Buffer / Label: 15N_13C_Sample / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 100 uM Component: human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1) Isotopic labeling: [U-100% 13C; U-100% 15N] |
Sample conditions | Ionic strength: 150 mM NaCl Not defined / Label: 15N_13C / pH: 6.5 / Pressure: 1 atm / Temperature: 293 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 5 / Details: Explicit Water | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |