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- PDB-7oqt: G-quadruplex structure of the C. elegans telomeric repeat: A two ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7oqt | ||||||||||||||||||||||||||||
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Title | G-quadruplex structure of the C. elegans telomeric repeat: A two tetrads basket type conformation stabilised by a Hoogsteen C-T base-pair | ||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-quadruplex / C. elegans telomere | Function / homology | : / DNA / DNA (> 10) | ![]() Biological species | ![]() ![]() Method | SOLUTION NMR / molecular dynamics | ![]() Marquevielle, J. / De Rache, A. / Amrane, S. | Funding support | 1items |
![]() ![]() Title: G-quadruplex structure of the C. elegans telomeric repeat: a two tetrads basket type conformation stabilized by a non-canonical C-T base-pair. Authors: Marquevielle, J. / De Rache, A. / Vialet, B. / Morvan, E. / Mergny, J.L. / Amrane, S. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 132.9 KB | Display | ![]() |
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PDB format | ![]() | 105.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 409.9 KB | Display | ![]() |
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Full document | ![]() | 588.9 KB | Display | |
Data in XML | ![]() | 38.8 KB | Display | |
Data in CIF | ![]() | 31.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6221.012 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() |
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#2: Chemical | ChemComp-K / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution / Contents: 2.4 mM 1H Asc20, 90% H2O/10% D2O / Label: Asc20 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 2.4 mM / Component: Asc20 / Isotopic labeling: 1H |
Sample conditions | Ionic strength: 90 mM / Label: NMR buffer / pH: 6.9 / Pressure: 1 atm / Temperature: 288 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 700 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 4 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 750 / Conformers submitted total number: 10 |