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Open data
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Basic information
Entry | Database: PDB / ID: 7mn3 | |||||||||
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Title | Homotarsinin monomer - Htr-M | |||||||||
![]() | Homotarsinin | |||||||||
![]() | ANTIMICROBIAL PROTEIN / antimicrobial peptide | |||||||||
Function / homology | defense response to bacterium / extracellular region / Homotarsinin![]() | |||||||||
Biological species | Phyllomedusa tarsius (brownbelly leaf frog) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
![]() | Verly, R.M. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure and membrane interactions of the homodimeric antibiotic peptide homotarsinin. Authors: Verly, R.M. / Resende, J.M. / Junior, E.F. / de Magalhaes, M.T. / Guimaraes, C.F. / Munhoz, V.H. / Bemquerer, M.P. / Almeida, F.C. / Santoro, M.M. / Pilo-Veloso, D. / Bechinger, B. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 160.2 KB | Display | ![]() |
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PDB format | ![]() | 138.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 383.8 KB | Display | ![]() |
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Full document | ![]() | 520.5 KB | Display | |
Data in XML | ![]() | 17 KB | Display | |
Data in CIF | ![]() | 25.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6wuxC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2759.427 Da / Num. of mol.: 1 / Source method: obtained synthetically Source: (synth.) Phyllomedusa tarsius (brownbelly leaf frog) References: UniProt: P84337 |
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Has ligand of interest | N |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution / Contents: 4.0 mM Htr-M, trifluoroethanol/water / Details: TFE-d2/H2O (30/70, v/v) / Label: natural abundace / Solvent system: trifluoroethanol/water |
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Sample | Conc.: 4.0 mM / Component: Htr-M / Isotopic labeling: natural abundance |
Sample conditions | Details: TFE-d2/H2O (30/70, v/v) / Ionic strength: 0 Not defined / Label: TFE-d2/H2O / pH: 7.0 pH* / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |